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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTCGCTACGATGAGACCTATAAGAAACTCGATAAGCTCGATTTCGTTACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAACAAATTTGGgtaatttctaccggagatttggggtttaaagagggttctactctcgaatgcgtgcaaacactcttcgctgatcttgtcctttgtttagtctatcagatgc...

Basic information

species Arabidopsis thaliana
transcript AT1G80700.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164222242|gb|ES082471.1|ES082471
EST:     GAACAAATTTGG                         GTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATC
genomic: GAACAAATTTGGgtaatttcta ... tttgtgttagGTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATC
EST: gi|164151266|gb|EL994054.1|EL994054
EST:     ACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAACAAATTTGG                         GTTTGTTTGGC
genomic: ACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAACAAATTTGGgtaatttcta ... tttgtgttagGTTTGATTGGC
EST: gi|86056308|gb|DR352065.1|DR352065
EST:     ACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAACAAATTTGG                         GTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCTGTAG
genomic: ACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAACAAATTTGGgtaatttcta ... tttgtgttagGTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCTGTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCTCGCTACGATGAGACCTATAAGAAACTCGATAAGCTCGATTTCGTTACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAACAAATTTGGgtaatttctaccggagatttggggtttaaagagggttctactctcgaatgcgtgcaaacactcttcgctgatcttgtcctttgtttagtctatcagatgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctactctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactcttc