1 5' 3' |
TACAGTGGACACGGTACGAGGTTGCCGGCTGAGACTGGTGAAGACGATGACACTGGTTTCGACGAGTGTATTGTTCCTTGCGACATGAATCTGATTACTGgtgagttttatctctctcttttttttgtgattgatggctacgatctgacgatcctataataatcagaagaatcttttgatggaaaagttttgattttttg...
species | Arabidopsis thaliana |
transcript | AT1G79340.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCGACGAGTGTATTGTTCCTTGCGACATTGAATCTGATTACTG ATGATGATTTTAGAGATCTTGTGGACAAGGTTCCTCCAGGTTGCAGAATGAEST: gi|47831586|gb|CK121270.1|CK121270
genomic: TTCGACGAGTGTATTGTTCCTTGCGACA-TGAATCTGATTACTGgtgagtttta ... ttgtttccagATGATGATTTTAGAGATCTTGTGGACAAGGTTCCTCCAGGTTGCAGAATGA
EST: CACTGGTTTCGACGAGTGTATTGTTCCTTGCGACATGAATCTGATTACTG ATGATGATTTTAGAGATCTTGTGGACAAGGTTCCTCCAGGTTGCAGAATGA
genomic: CACTGGTTTCGACGAGTGTATTGTTCCTTGCGACATGAATCTGATTACTGgtgagtttta ... ttgtttccagATGATGATTTTAGAGATCTTGTGGACAAGGTTCCTCCAGGTTGCAGAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAGTGGACACGGTACGAGGTTGCCGGCTGAGACTGGTGAAGACGATGACACTGGTTTCGACGAGTGTATTGTTCCTTGCGACATGAATCTGATTACTGgtgagttttatctctctcttttttttgtgattgatggctacgatctgacgatcctataataatcagaagaatcttttgatggaaaagttttgattttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atggaaaa