1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcacttaaagttaactctctctttctctagtaatcataataaactaattaatcaattaacaagacgtaaccgtatttttttgtttttggttaatttgaagTGGTGGTGAATGGGGTAAACCGGGGAAGACTTGCTTGGGTGAGACGGTACCAGTGCAAGGACCAAGTTACCCCGGACGACCTAATGAAGGTGAAGCTATA
species | Arabidopsis thaliana |
transcript | AT1G78710.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCATCTTTAACACATTCCACTGGTGGTCTCACACTGGCCGTGCCAAAAC TGGTGGTGAATGGGGTAAACCGGGGA
genomic: GCCATCTTTAACACATTCCACTGGTGGTCTCACACTGGCCGTGCCAAAACgtaagtatca ... taatttgaagTGGTGGTGAATGGGGTAAACCGGGGA
aattaatcaattaacaagacgtaaccgtatttttttgtttttggttaatttgaagTGGTGGTGAATGGGGTAAACCGGGGAAGACTTGCTTGGGTGAGACGGTACCAGTGCAAGGACCAAGTTACCCCGGACGACCTAATGAAGGTGAAGCTATA
tatttttttgtttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacttaaagttaactctctctttctctagtaatcataataaactaattaatcaattaacaagacgtaaccgtatttttttgtttttggttaatttgaagTGGTGGTGAATGGGGTAAACCGGGGAAGACTTGCTTGGGTGAGACGGTACCAGTGCAAGGACCAAGTTACCCCGGACGACCTAATGAAGGTGAAGCTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- acttaaa
- - - - - - - -tctctct
- - - - - - - - - - - - - - - -aatcata
- - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - taatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtaacc