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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGATTGCTTTGACAACTTGGTCTAAATGGATTGATCACAATATCGATCCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAAgttaactctctctttctctagtaatcataataaactaattaatcaattaacaagacgtaaccgtatttttttgtttttggttaatttgaag

Basic information

species Arabidopsis thaliana
transcript AT1G78710.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116417659|gb|EG460251.1|EG460251
EST:     CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAA                         TGGTGGTGAATGGGGTAAACCGGGGAA
genomic: CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAAgttaactctc ... taatttgaagTGGTGGTGAATGGGGTAAACCGGGGAA
EST: gi|116417560|gb|EG460152.1|EG460152
EST:     CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAA                         TGGTGGTGAATGGGGTAAACCGGGGA
genomic: CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAAgttaactctc ... taatttgaagTGGTGGTGAATGGGGTAAACCGGGGA
EST: gi|116417794|gb|EG460386.1|EG460386
EST:     CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAA                         TGGTGGTGAATGGGGTAAACCGGGGAA
genomic: CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAAgttaactctc ... taatttgaagTGGTGGTGAATGGGGTAAACCGGGGAA
EST: gi|116417759|gb|EG460351.1|EG460351
EST:     CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAA                         TGGTGGTGAATGGGGTAAACCGGGGA
genomic: CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAAgttaactctc ... taatttgaagTGGTGGTGAATGGGGTAAACCGGGGA
EST: gi|116417604|gb|EG460196.1|EG460196
EST:     CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAA                         TGGTGGTGAATGGGGTAAACCGGGGA
genomic: CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAAgttaactctc ... taatttgaagTGGTGGTGAATGGGGTAAACCGGGGA
EST: gi|116417770|gb|EG460362.1|EG460362
EST:     CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAA                         TGGTGGTGAATGGGGTAAACCGGGGAA
genomic: CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAAgttaactctc ... taatttgaagTGGTGGTGAATGGGGTAAACCGGGGAA
EST: gi|116417783|gb|EG460375.1|EG460375
EST:     CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAA                         TGGTGGTGAATGGGGTAAACCGGGGA
genomic: CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAAgttaactctc ... taatttgaagTGGTGGTGAATGGGGTAAACCGGGGA
EST: gi|116417671|gb|EG460263.1|EG460263
EST:     CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAA                         TGGTGGTGAATGGGGTAAACCGGGGA
genomic: CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAAgttaactctc ... taatttgaagTGGTGGTGAATGGGGTAAACCGGGGA
EST: gi|116417626|gb|EG460218.1|EG460218
EST:     CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAA                         TGGTGGTGAATGGGGTAAACCGGGGA
genomic: CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAAgttaactctc ... taatttgaagTGGTGGTGAATGGGGTAAACCGGGGA
EST: gi|116417737|gb|EG460329.1|EG460329
EST:     CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAA                         TGGTGGTGAATGGGGTAAACCGGGGA
genomic: CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAAgttaactctc ... taatttgaagTGGTGGTGAATGGGGTAAACCGGGGA
EST: gi|116417726|gb|EG460318.1|EG460318
EST:     CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAA                         TGGTGGTGAATGGGGTAAACCGGGGAA
genomic: CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAAgttaactctc ... taatttgaagTGGTGGTGAATGGGGTAAACCGGGGAA
EST: gi|116417537|gb|EG460129.1|EG460129
EST:     CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAA                         TGGTGGTGAATGGGGTAAACCGGGGA
genomic: CCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAAgttaactctc ... taatttgaagTGGTGGTGAATGGGGTAAACCGGGGA