1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgatgtataaagattcaatcacatcaccttttgagaagtaaactatgaatatccatctgcgtagaggaaaattttgatttttctgtttttcattatttagCATAAACACCGTTTACTATATGGCGCCTTTTGCCACCATGATTCTCGGGATACCAGCGTTATTACTGGAAGGCAGTGGAATTTTGAGCTGGTTTGAAGCA
species | Arabidopsis thaliana |
transcript | AT1G77610.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAAAGACCATTCTAGCCGAATCTCTTCTTCATGGTTACAAATTTGACAG CATAAACACCGTTTACTATATGGCGCCTTTTGCCACCATGATTCTCGGGATEST: gi|164148350|gb|ES067067.1|ES067067
genomic: ACAAAGACCATTCTAGCCGAATCTCTTCTTCATGGTTACAAATTTGACAGgtcagtgccc ... cattatttagCATAAACACCGTTTACTATATGGCGCCTTTTGCCACCATGATTCTCGGGAT
EST: ACAAAGACCATTCTGGCCGAATCTCTTCTTCATGGTTACAAATTTGACAG CATAAACACCGTTTACTATATGG
genomic: ACAAAGACCATTCTAGCCGAATCTCTTCTTCATGGTTACAAATTTGACAGgtcagtgccc ... cattatttagCATAAACACCGTTTACTATATGG
tgaatatccatctgcgtagaggaaaattttgatttttctgtttttcattatttagCATAAACACCGTTTACTATATGGCGCCTTTTGCCACCATGATTCTCGGGATACCAGCGTTATTACTGGAAGGCAGTGGAATTTTGAGCTGGTTTGAAGCA
ttttgat putative branch site (score: 4)
tttttctgtttttcat CT-rich tract
aaaattttgatttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgtataaagattcaatcacatcaccttttgagaagtaaactatgaatatccatctgcgtagaggaaaattttgatttttctgtttttcattatttagCATAAACACCGTTTACTATATGGCGCCTTTTGCCACCATGATTCTCGGGATACCAGCGTTATTACTGGAAGGCAGTGGAATTTTGAGCTGGTTTGAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - ataaaga
- - - - - - - - aatcaca
- - - - - - - - - - - - - - - - - - - -aaactat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggaaa