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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGTTGTCCCAAGTAGACTGTTGTAAAAGGATTAACGCTATAGAAATGGACATGATGAGAAATGGTTTTCAGCACAGTCCTATCTCAAGGCTGAATGTGgttagtttctgctccatatagataggtcttgacctgttttaagcagattaatcaaatgtaatattaatctggaaaatcccttttaaggcgatactatcaatctttacttcttcattgtgtatgtttgtgttatatatcagaacaatggacttatcgtttacactttcctttttctttcccag

Basic information

species Arabidopsis thaliana
transcript AT1G76280.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G76280.3 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv18s0001g00070.t01 (Vitis vinifera), 5'ss of exon 8
CATGTTGTCCCAAGTAGACTGTTGTAAAAGGATTAACGCTATAGAAATGGACATGATGAGAAATGGTTTTCAGCACAGTCCTATCTCAAGGCTGAATGTGgttagtttctgctccatatagataggtcttgacct-gttttaagcagat-taatcaaatgtaatattaatctggaaaatcccttttaaggcgatactatcaatctttacttcttcattgtgtatgtttgtgttatatatcagaacaatggacttatcgtttacactttcctttttctttcccag
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TATGTTGTCACAGGTTGATGTCGCTAGAAGGATAAAGGCTATAGAAATGGACATGATGAATAATGGCATTCAACACAGTCATTTATCAATGAAGAACTTGgtatgcctctattctttgtgtttgctatttatttttactttcttttgctataaatgttcacaatattgcttcaacaatgtaatcatacaaagatcaaact------------------------------------------------------------------------------------