Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgatctgttcttatatattacgatgatatttttatgtttttcatcaacatatatttatagttaatattcatgcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGAGCCATCTTTTGTGTGAGGGTAAAAGACAAAGTCATCGAAGATATGAAGA

Basic information

species Arabidopsis thaliana
transcript AT1G75870.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116393345|gb|EG435937.1|EG435937
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116393364|gb|EG435956.1|EG435956
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116380995|gb|EG423587.1|EG423587
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116393366|gb|EG435958.1|EG435958
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116380994|gb|EG423586.1|EG423586
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTGTGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116393356|gb|EG435948.1|EG435948
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116393365|gb|EG435957.1|EG435957
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116393363|gb|EG435955.1|EG435955
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116375811|gb|EG418403.1|EG418403
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116393340|gb|EG435932.1|EG435932
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116393333|gb|EG435925.1|EG435925
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116380997|gb|EG423589.1|EG423589
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116393344|gb|EG435936.1|EG435936
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116393332|gb|EG435924.1|EG435924
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116393359|gb|EG435951.1|EG435951
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
EST: gi|116393361|gb|EG435953.1|EG435953
EST:     TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAG                         AACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA
genomic: TGATTGCTCCATATCATCAACAAGCAAAAGACATTAACCATATGTTACAGgttttgatct ... gcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttttatgtttttcatcaacatatatttatagttaatattcatgcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGAGCCATCTTTTGTGTGAGGGTAAAAGACAAAGTCATCGAAGATATGAAGA
                                agttaat  putative branch site (score: 4)
     ttatgtttttcatcaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttttgatctgttcttatatattacgatgatatttttatgtttttcatcaacatatatttatagttaatattcatgcatgtgcagAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGTCTCGAGGAGAGAGCCATCTTTTGTGTGAGGGTAAAAGACAAAGTCATCGAAGATATGAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA