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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGACGGTGGCGGTCCCGTTCCTGGACCTCCCGGCGCCATTGATAAGAAATACGCCGACGCTCTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAATgtaatcattcctaaatctttctaatcgtgtctccacgatctccaattcgaattccaaattcatcatatctcccgctaagtttcaaatctagtctctactgattaattgtgattttgatttctatgtag

Basic information

species Arabidopsis thaliana
transcript AT1G75680.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G75680.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv18s0001g14040.t01 (Vitis vinifera), 5'ss of exon 1
GATGACGGTGGCGGTCCCGTTCCTGGACCTCCCGGCGCCATTGATAAGAAATACGCCGACGCTCTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAATgtaatcattcctaaatctttctaatcgt-gtctccacgatctccaattcgaattccaaattcatcatatctcccgctaagtttcaaatctagtctctactgattaattgtgattttgatttctatgtag
  ||||   |  | ||| || ||||| ||||||||||||||||||||||||||| |||||||||| || || ||  |||||||||||||||| || ||||||| |   || |   |   |||  |  | || | | | ||      |||  | ||  |  ||      | |    ||     | |  | |  | |||  ||||                          
TCTGACAAGGCTGCTCCGGTGCCTGGGCCTCCCGGCGCCATTGATAAGAAATACTCCGACGCTCTCAAACTTGCCATGCAGTTCTTCGATATACAAAAATgtactttctcattctttcatctggtttttgttttcgcaatgcagtgttcccactcatagatctattcgtttttt-ctggtcattaggtgt--tttcttttgat--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125265724|gb|EL279809.1|EL279809
EST:     ATACGCCGACGCTCTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAAT                         CTGGTAAATTGGAGAACAATAAG
genomic: ATACGCCGACGCTCTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAATgtaatcattc ... ttctatgtagCTGGTAAATTGGAGAACAATAAG
EST: gi|86052857|gb|DR348614.1|DR348614
EST:     ATACGCCGACGCTCTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAAT                         CTGGTAAATTGGAGAACAATAAGATACCTTGGAGAGGAGATTCAGGTCTTA
genomic: ATACGCCGACGCTCTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAATgtaatcattc ... ttctatgtagCTGGTAAATTGGAGAACAATAAGATACCTTGGAGAGGAGATTCAGGTCTTA
EST: gi|125172851|gb|EL194800.1|EL194800
EST:     CTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAAT                         CTGGTAAATTGGAGAACAATAAGATACCTTGGAGAGGAGATTCAGGTCTTA
genomic: CTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAATgtaatcattc ... ttctatgtagCTGGTAAATTGGAGAACAATAAGATACCTTGGAGAGGAGATTCAGGTCTTA
EST: gi|125162652|gb|EL189422.1|EL189422
EST:     ATACGCCGACGCTCTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAAT                         CTGGTAAATTGGAGAACAATAAGAT
genomic: ATACGCCGACGCTCTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAATgtaatcattc ... ttctatgtagCTGGTAAATTGGAGAACAATAAGAT
EST: gi|86052856|gb|DR348613.1|DR348613
EST:     ATACGCCGACGCTCTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAAT                         CTGGTAAATTGGAGAAC
genomic: ATACGCCGACGCTCTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAATgtaatcattc ... ttctatgtagCTGGTAAATTGGAGAAC
EST: gi|125311024|gb|EL325109.1|EL325109
EST:     ATACGCCGACGCTCTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAAT                         CTGGTAAATTGGAGAACAATAAGATA
genomic: ATACGCCGACGCTCTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAATgtaatcattc ... ttctatgtagCTGGTAAATTGGAGAACAATAAGATA