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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtagtttcaagaatccaaacacttataacgtggcctatacagtttaatctaacaccgtagaatatttcgcagCTGTGATCAACAAAGAGGAAGATATTGCTGCTTACACGATCAAGGCGGTGGATGATCCTAGGACTCTGAACAAAATCCTATACATTAAGCCTTCTAACAA

Basic information

species Arabidopsis thaliana
transcript AT1G75280.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125201967|gb|EL216921.1|EL216921
EST:     TTCTCCTCCTAGAGACAAAGTCACCATTCTTGGCGATGGAAATGCCAAAG                         CTGTGATCAACAAAGAGGAAGATATTGCTGCTTAC
genomic: TTCTCCTCCTAGAGACAAAGTCACCATTCTTGGCGATGGAAATGCCAAAGgttagtagtt ... tatttcgcagCTGTGATCAACAAAGAGGAAGATATTGCTGCTTAC
EST: gi|116406066|gb|EG448658.1|EG448658
EST:     TTCTCCTCCTAGAGACAAAGTCACCATTCTTGGCGATGGAAATGCCAAAG                         CTGTGATCAACAAAGAGGAAGATATTGCTGCTTACACGATCAAGGCGGTGG
genomic: TTCTCCTCCTAGAGACAAAGTCACCATTCTTGGCGATGGAAATGCCAAAGgttagtagtt ... tatttcgcagCTGTGATCAACAAAGAGGAAGATATTGCTGCTTACACGATCAAGGCGGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacacttataacgtggcctatacagtttaatctaacaccgtagaatatttcgcagCTGTGATCAACAAAGAGGAAGATATTGCTGCTTACACGATCAAGGCGGTGGATGATCCTAGGACTCTGAACAAAATCCTATACATTAAGCCTTCTAACAA
                             atctaac  putative branch site (score: 2)
                         tttaatctaa  TA-rich tract