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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacatctctattgggtaaattttgtgaaacctttgttgcctactgatatagcctttttataaaagctgttagtctttattcgctgcagtgatttctttcatctatgaaagattaggtgtttcgcttgttttcagtccatattatcatcttaactgatctcgccctttttttcctattccattttatagTACAATGACAACAGTGGGAATTCGTATTCTGATGTATTCTGGCTTGCTGTGCTTGTTCAGTCAGTTGGTGATCTCGAATTCTGTCAGCAG

Basic information

species Arabidopsis thaliana
transcript AT1G73960.2
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73960.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GLYMA05G07920.1 (Glycine max), 3'ss of exon 19
gtatacatctctattgggtaaattttgtgaaacctttgttgcctactgatatagcctttttataaaagctgttagtctttattcgctgcagtgatttctttcatctatgaaagattaggtgtttcgcttgttttcagtccatattatcatcttaactgatctcgccctttttttcctattccattttatagTACAATGACAACAGTGGGAATTCGTATTCTGATGTATTCTGGCTTGCTGTGCTTGTTCAGTCAGTTGGTGATCTCGAATTCTGTCAGCAG
                                                                                        ||| ||||  | | ||     ||   |||    |||   || | |  |     ||| |||| |||    | ||  | | ||||| |||| ||   ||||  ||||||||||||||| ||||||  | || |||||||| ||||||||||||| | | || ||||||||||| || || || ||  | || |||
----------------------------------------------------------------------------------------cag-gattgttattattggc-aagttttattgcttttagttatataaaagttgtatgatcagctttgaggctcatgtcatttttatcctcttatttttt-cagTACAATGACAACAATGGGAACCCTTACTCTGATGTCTTCTGGCTTGCTGCGTTGGTCCAGTCAGTTGGCGAGCTTGAGTTTGGACAACAG

upper sequence: AT1G73960.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GLYMA17G13080.2 (Glycine max), 3'ss of exon 19
gtatacatctctattgggtaaattttgtgaaacctttgttgcctactgatatagcctttttataaaagctgttagtctttattcgctgcagtgatttctttcatctatgaaagattaggtgtttcgcttgttttcagtccatattatcatcttaactgatctcgccctttttttcctattccattttatagTACAATGACAACAGTGGGAATTCGTATTCTGATGTATTCTGGCTTGCTGTGCTTGTTCAGTCAGTTGGTGATCTCGAATTCTGTCAGCAG
                                                                                        ||| ||||  | | || |  ||    ||     |||   || | |  |     ||| |||| |||    | ||  | | ||||| |||| ||   ||||  ||||||||||||||| ||||||  | || || |||||||||||||||||||   | || |||||||||||||| || || ||  | || |||
----------------------------------------------------------------------------------------cag-gattattattat-tgggatgttttcttgcttttagttatataaaagttgtatgatcagctttgtggctcatgtcatttttatcctcttatttttt-cagTACAATGACAACAATGGGAACCCTTACTCAGATGTATTCTGGCTTGCTGCATTAGTCCAGTCAGTTGGTGAGCTTGAGTTTGGGCAACAG

upper sequence: AT1G73960.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GLYMA17G13080.3 (Glycine max), 3'ss of exon 19
gtatacatctctattgggtaaattttgtgaaacctttgttgcctactgatatagcctttttataaaagctgttagtctttattcgctgcagtgatttctttcatctatgaaagattaggtgtttcgcttgttttcagtccatattatcatcttaactgatctcgccctttttttcctattccattttatagTACAATGACAACAGTGGGAATTCGTATTCTGATGTATTCTGGCTTGCTGTGCTTGTTCAGTCAGTTGGTGATCTCGAATTCTGTCAGCAG----------
                                                                                        ||| ||||  | | || |  ||    ||     |||   || | |  |     ||| |||| |||    | ||  | | ||||| |||| ||   ||||  ||||||||||||||| ||||||  | || || |||||||||||||||||||   | || |||||||||||||| || || ||  | || |||          
----------------------------------------------------------------------------------------cag-gattattattat-tgggatgttttcttgcttttagttatataaaagttgtatgatcagctttgtggctcatgtcatttttatcctcttatttttt-cagTACAATGACAACAATGGGAACCCTTACTCAGATGTATTCTGGCTTGCTGCATTAGTCCAGTCAGTTGGTGAGCTTGAGTTTGGGCAACAGGTTCATAGAC

upper sequence: AT1G73960.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 19
gtatacatctctattgggtaaattttgtgaaacctttgttgcctactgatatagcctttttataaaagctgttagtctttattcgctgcagtgatttctttc-atctatgaaagattaggtgtttcgcttgttttcagtccatattatcatcttaactgatctcgccctttttttcctatt-ccattttatagTACAATGACAACAGTGGGAATTCGTATTCTGATGTATTCTGGCTTGCTGTGCTTGTTCAGTCAGTTGGTGATCTCGAATTCTGTCAGCAG
                                                                                           |  ||| || | ||| ||  | | |    | | ||  | | |  | ||  || || |  ||||    | | ||     |  |||  | |         | |||| || || || | ||||||| | || ||||||||||||||||||||||  || || ||||||||||| || || |||||  | || |||
-------------------------------------------------------------------------------------------tcttttgttcctatccatttatgttctcat-tatcagtggctcac-gtgaatttttttttctttttggttttcatttctgcttttttgtaattgccccacagTATAACGATAATAATGGGAATCCTTACTCTGATGTATTCTGGCTTGCTGCACTAGTGCAGTCAGTTGGGGAACTTGAATTTGGGCAACAG

upper sequence: AT1G73960.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: PP1S185_43V6.1 (Physcomitrella patens), 3'ss of exon 21
gtatacatctctattgggtaaattttgtgaaacctttgttgcctactgatatagcctttttataaaagctgttagtctttattcgctgcagtgatttctttcatctatgaaagattaggtgtttcgcttgttttcagtccatattatcatcttaactgatctcgccctttttttcctattccattt-tatagTACAATGACAACAGTGGGAATTCGTATTCTGATGTATTCTGGCTTGCTGTGCTTGTTCAGTCAGTTGGTGATCTCGAATTCTGTCAGCAG
                                                                                         || || |||     | || |    |||| ||   | | |   |  || |  |  |  | | |  |   ||        | |  |   | |    ||  |  || | ||||||||||| |||||| | |||||||||||||||||||| ||     |  || | ||  | |||   || || ||| |  |||||
-----------------------------------------------------------------------------------------agggaattcacgttttta-gggttattatgttcatagtta--tcgcaataaaagtattgaacacatgagagtctattgtctactcattttggggttggtgcagCATAATGACAACAGCGGGAATGCATATTCTGATGTATTCTGGCTAGCGTCTGTCATTGAATCCATAGGTTCACTGGAGTTCGGGAAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtccatattatcatcttaactgatctcgccctttttttcctattccattttatagTACAATGACAACAGTGGGAATTCGTATTCTGATGTATTCTGGCTTGCTGTGCTTGTTCAGTCAGTTGGTGATCTCGAATTCTGTCAGCAG
                       tctcgccctttttttc  CT-rich tract
     tattatcatcttaa  TA-rich tract