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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGATAGGTGTGGCGTATGCGGCTGCAGATTTGGTTATCTCGAGAGCTGGTGCAATGACTTGCTCAGAGATTATGGCTTTAGGCAAACCTTCTATTCTGgtatttgaaatctataagctgattcatcgaatttgctaatggagtgtgttgtttcttgttttaaaacattgaatgttcttttgttttgttttttaag

Basic information

species Arabidopsis thaliana
transcript AT1G73740.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73740.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv17s0000g03190.t01 (Vitis vinifera), 5'ss of exon 4
GTCGATAGGTGTGGCGTATGCGGCTGCAGATTTGGTTATCTCGAGAGCTGGTGCAATGACTTGCTCAGAGATTATGGCTTTAGGCAAACCTTCTATTCTGgtatttgaaatct--ataagctgattcatcgaatttgctaatggagtgtgttgtttcttgttttaaaacattgaatgttcttttgttttgttttttaag--
    || | | | |||||||| ||||||||  | ||| | || ||||||||||||||||||||| | |||||  ||||    || |||||||||||||||||| |||  ||    || |   | ||  |   |  |    ||| | |     | |  |  || | |    || |      |  ||  |    |  |||   
CAATATGGATTTAGCGTATGCAGCTGCAGACCTTGTTGTTTCTAGAGCTGGTGCAATGACTTGCACTGAGATCTTGGCCACTGGGAAACCTTCTATTCTGgtagttggcattctaatcataagttttctttgagataaacatgaaata-acagctaataattatgatgtgttaatctgaatcatgcatgagatgataatat