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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaagcaacactgaacatttcaattggaacttatctaattttgaagttttttggtttcttgtgatccttttcacagATGTATGATAAAGCTGTTGAGTTATATGCTGAACTAGCAGAGACAGCAGTGAATAGCTTTTTGATATCCAAGGATTCTCCAATGGCTGAGCCAGTTAGAA

Basic information

species Arabidopsis thaliana
transcript AT1G73570.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73570.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv17s0000g02280.t01 (Vitis vinifera), 3'ss of exon 1
-------------gtaagcaagcaacactgaacatttcaattggaacttatctaattttgaagttttttggtt-----tcttgtgatccttt--tcacagATGTATGATAAAGCTGTTGAGTTATATGCTGAACTAGCAGAGACAGCAGTGAATAGCTTTTTGATATCCAAGGATTCTCCAATGGCTGAGCCAGTTAGAA
               |  |||||   ||  ||   ||  |   |   |||| |  || | ||   | ||| ||     | | |||||  |||  |  ||||||||||||||||| |||||| ||||||||||| ||||||| | ||| ||||| || ||||| || || |||||||| ||| ||  ||| || |||||  
aacttttgtatggaaacacaagctctacaaaatcattatagaagtttttattttcttcttaatagtcttgtttatgagtttggtgattgtttgttttcagATGTATGATAAAGCGGTTGAGCTATATGCTGAATTAGCAGAAATAGCTGTGAACAGTTTTTTAATTTCGAAGGATTCACCAGTGATTGAACCTGTTAGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattggaacttatctaattttgaagttttttggtttcttgtgatccttttcacagATGTATGATAAAGCTGTTGAGTTATATGCTGAACTAGCAGAGACAGCAGTGAATAGCTTTTTGATATCCAAGGATTCTCCAATGGCTGAGCCAGTTAGAA
           atctaat  putative branch site (score: 3)
                                           tccttttcac  putative PPT
         ttatctaattttgaag  TA-rich tract