Sequence
atgc intronic sequence ATGC exonic sequencegtaccaatctctctctctctctttttttgtttttcgttcttcttttgtagttgtgtcatggccataattcttgagtttcttgtagCTTTAGATAGCGACGATTTACTTTATCTGAAAGAACAGATGGAAGCAGAGGAAGATGCAGAACGTCTTCTGAGACGAACTGAGAAACGGGCTTTTGCTGC
Basic information
species | Arabidopsis thaliana |
transcript | AT1G73350.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G73350.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G146786_T01 (Zea mays), 3'ss of exon 3
gtaccaatctctctctctctctttttttgtttttcgttcttcttttgtagttgtgtcatggccataattcttgagtttcttgtagCTTTAGATAGCGACGATTTACTTTATCTGAAAGAACAGATGGAAGCAGAGGAAGATGCAGAACGTCTTCTGAGACGAACTGAGAAACGGGCTTTTGCTGC
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----------gtatttcatgcttcttttataggaagaccc-ctgtaaagtttgtagctcccttgttaaccttg---ttctt-cagCATTGGACAGCGATGATTTGCTTTACCTGAAAGAGCAAATGGAAGCTGAAGAAGATGCAGAGCGCCTTCTTCGTCATACTGAGAAGCGGGCATTTGCTGC
upper sequence: AT1G73350.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA09G28980.2 (Glycine max), 3'ss of exon 3
gtaccaatctctctctctctctttttt---------tgtttttcgttcttcttttgtagttgtgtcatggccataattctt--------gagttt---cttgtagCTTTAGATAGCGACGATTTACTTTATCTGAAAGAACAGATGGAAGCAGAGGAAGATGCAGAACGTCTTCTGAGACGAACTGAGAAACGGGCTTTTGCTGC
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gtacagttctttttcccctgcttttgtgtgtctgtgtgttgcttgcacttccgtttcacatgcttctttagtttctttcttcccttttaaagtttaaatgtgcagCCTTGGACAGTGATGATCTACTTTATCTCAAAGAGCAAATGGAAGCCGAGGAGGATGCAGAACGCCTCCTGCGTCGCACTGAAAAACGGGCATTTGCTGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116453294|gb|EG495886.1|EG495886EST: GATGCAAGAGGTTGCTGGTGAACGTGGAGGCTATCTTCATGGACGAGGCG CTTTAGATAGCGACGATTTACTTTATCTGAAAGAACAGATGGAAGCAGAGG
genomic: GATGCAAGAGGTTGCTGGTGAACGTGGAGGCTATCTTCATGGACGAGGCGgtaccaatct ... tttcttgtagCTTTAGATAGCGACGATTTACTTTATCTGAAAGAACAGATGGAAGCAGAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttcgttcttcttttgtagttgtgtcatggccataattcttgagtttcttgtagCTTTAGATAGCGACGATTTACTTTATCTGAAAGAACAGATGGAAGCAGAGGAAGATGCAGAACGTCTTCTGAGACGAACTGAGAAACGGGCTTTTGCTGC
tttcttgt CT-rich tract
ataattctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaccaatctctctctctctctttttttgtttttcgttcttcttttgtagttgtgtcatggccataattcttgagtttcttgtagCTTTAGATAGCGACGATTTACTTTATCTGAAAGAACAGATGGAAGCAGAGGAAGATGCAGAACGTCTTCTGAGACGAACTGAGAAACGGGCTTTTGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC