1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tacataaggagccaatatgttatctttcagaaagtctttttgtatttcttgatctcgaacatgattgattgatagttgacaatatccctgttgagagcagATCCACCATCTATCTTCTTGATACAGTCTTCGAGTCTTGTGTAATAAAGCAAAAGTTGTGTCATTCCAGCTATCAAAATATCCATACCACACAAGAAGTT
species | Arabidopsis thaliana |
transcript | AT1G71310.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
ttcttgatctcgaacatgattgattgatagttgacaatatccctgttgagagcagATCCACCATCTATCTTCTTGATACAGTCTTCGAGTCTTGTGTAATAAAGCAAAAGTTGTGTCATTCCAGCTATCAAAATATCCATACCACACAAGAAGTT
agttgac putative branch site (score: 4)
tccctgtt putative PPT
attgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacataaggagccaatatgttatctttcagaaagtctttttgtatttcttgatctcgaacatgattgattgatagttgacaatatccctgttgagagcagATCCACCATCTATCTTCTTGATACAGTCTTCGAGTCTTGTGTAATAAAGCAAAAGTTGTGTCATTCCAGCTATCAAAATATCCATACCACACAAGAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
-acataag
- - - - gagccaa
- - - - - - - - - - - - - -cagaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaata