Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtcaatgttatattcatctttttcatatagatataaccaggagatcatttcaaacctagttaaaacctataaatatgatatgttattggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATAAGAACTTGATCACGTTTAGGGTTATAGAAGGTGATCTGATGAAAGAGTA

Basic information

species Arabidopsis thaliana
transcript AT1G70830.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063943|gb|DR359700.1|DR359700
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063942|gb|DR359699.1|DR359699
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063948|gb|DR359705.1|DR359705
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGATGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063919|gb|DR359676.1|DR359676
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063956|gb|DR359713.1|DR359713
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86059117|gb|DR354874.1|DR354874
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063946|gb|DR359703.1|DR359703
EST:     GGCGACTGGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: GGCGACT-GGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063916|gb|DR359673.1|DR359673
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGCGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063952|gb|DR359709.1|DR359709
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063933|gb|DR359690.1|DR359690
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86059121|gb|DR354878.1|DR354878
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063949|gb|DR359706.1|DR359706
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGAATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063937|gb|DR359694.1|DR359694
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063953|gb|DR359710.1|DR359710
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063913|gb|DR359670.1|DR359670
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063918|gb|DR359675.1|DR359675
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063945|gb|DR359702.1|DR359702
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         WTKGGSAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063915|gb|DR359672.1|DR359672
EST:     AGGCGACTGGGGCACAGGCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86059120|gb|DR354877.1|DR354877
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063924|gb|DR359681.1|DR359681
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATR                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAMGGCGGTGGAGCCAGAT
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGA-GGCGGTGGAGCCAGAT
EST: gi|47829973|gb|CK119657.1|CK119657
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|47831001|gb|CK120685.1|CK120685
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063926|gb|DR359683.1|DR359683
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGC-AGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063928|gb|DR359685.1|DR359685
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063935|gb|DR359692.1|DR359692
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|47831919|gb|CK121603.1|CK121603
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063929|gb|DR359686.1|DR359686
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063914|gb|DR359671.1|DR359671
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063921|gb|DR359678.1|DR359678
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86059118|gb|DR354875.1|DR354875
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGG
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGG
EST: gi|86063925|gb|DR359682.1|DR359682
EST:     GGCGACTGGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: GGCGACTGGGG-CACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063951|gb|DR359708.1|DR359708
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063927|gb|DR359684.1|DR359684
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|47828519|gb|CK118203.1|CK118203
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|47829637|gb|CK119321.1|CK119321
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063920|gb|DR359677.1|DR359677
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|124823479|gb|EH908345.1|EH908345
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAG
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAG
EST: gi|86063955|gb|DR359712.1|DR359712
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063922|gb|DR359679.1|DR359679
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063930|gb|DR359687.1|DR359687
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063941|gb|DR359698.1|DR359698
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063954|gb|DR359711.1|DR359711
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063934|gb|DR359691.1|DR359691
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063940|gb|DR359697.1|DR359697
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
EST: gi|86063950|gb|DR359707.1|DR359707
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAGAGGAGAGGATCGAGGCGGTGGAGCCAGAT
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGA-AGGAGAGGATCGAGGCGGTGGAGCCAGAT
EST: gi|86063931|gb|DR359688.1|DR359688
EST:     AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG                         ATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA
genomic: AGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATGgcaagtcaat ... attggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagatcatttcaaacctagttaaaacctataaatatgatatgttattggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATAAGAACTTGATCACGTTTAGGGTTATAGAAGGTGATCTGATGAAAGAGTA
                    ttaaaacctataaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaagtcaatgttatattcatctttttcatatagatataaccaggagatcatttcaaacctagttaaaacctataaatatgatatgttattggtacagATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATAAGAACTTGATCACGTTTAGGGTTATAGAAGGTGATCTGATGAAAGAGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC