Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125290334|gb|EL304419.1|EL304419EST: AGGCGACTGGGGTCAAGTCGGCTCTATCGTCTTCTGGAACTACGTTCATG ATAGAGAGGCAAAGGTGGCTAAGGAGAGGA
genomic: AGGCGACTGGGGTCAAGTCGGCTCTATCGTCTTCTGGAACTACGTTCATGgcaagtcaat ... attggtgcagATAGAGAGGCAAAGGTGGCTAAGGAGAGGA
EST:
gi|47831919|gb|CK121603.1|CK121603EST: AGGCGACTGGGGTCAAGTCGGCTCTATCGTCTTCTGGAACTACGTTCATG ATGGAGAGGCAAAGGTGGCTAAGGAG
genomic: AGGCGACTGGGGTCAAGTCGGCTCTATCGTCTTCTGGAACTACGTTCATGgcaagtcaat ... attggtgcagATAGAGAGGCAAAGGTGGCTAAGGAG
EST:
gi|125152507|gb|EL184115.1|EL184115EST: TCGGCTCTATCGTCTTCTGGAACTACGTTCATG ATAGAGAGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATA
genomic: TCGGCTCTATCGTCTTCTGGAACTACGTTCATGgcaagtcaat ... attggtgcagATAGAGAGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATA
EST:
gi|47831001|gb|CK120685.1|CK120685EST: AGGCGACTGGGGTCAAGTCGGCTCTATCGTCTTCTGGAACTACGTTCATG ATAGAGAGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAG
genomic: AGGCGACTGGGGTCAAGTCGGCTCTATCGTCTTCTGGAACTACGTTCATGgcaagtcaat ... attggtgcagATAGAGAGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAG
EST:
gi|86063938|gb|DR359695.1|DR359695EST: AGGCGACTGGGGTCAAGTCGGCTCTATCGTCTTCTGGAACTACGTTCATG ATAGAGAGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATA
genomic: AGGCGACTGGGGTCAAGTCGGCTCTATCGTCTTCTGGAACTACGTTCATGgcaagtcaat ... attggtgcagATAGAGAGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATA
EST:
gi|86080369|gb|DR376126.1|DR376126EST: ACTACGTTCATG ATAGAGAGGCAAAGSTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATA
genomic: ACTACGTTCATGgcaagtcaat ... attggtgcagATAGAGAGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataaccatgtctcaaagttaaacatataatatcaattgttaaataattggtgcagATAGAGAGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATAAGAACTTGATCACGTTTAGGGTTATCGACGGTGATCTGATGAAAGAGTA
gtataac putative branch site (score: 3)
tcaaagttaaacatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaagtcaatgttatatacatcttgttcatgtataaccatgtctcaaagttaaacatataatatcaattgttaaataattggtgcagATAGAGAGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATAAGAACTTGATCACGTTTAGGGTTATCGACGGTGATCTGATGAAAGAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC