1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTGATCCCTACAAGCGGATAAGTTCGCCGGGATCTATATTGGATGCTGAGAAGGTAGAGAAAAAGCCTGGAGGATGGAGAGCCGTCTCGTTCATTTTAGgtattttaattttatttttaggcttcgtgtacataatttagtttacctaatccttgacctttcctcagttattggctaatatttttttgttaatttcctt...
species | Arabidopsis thaliana |
transcript | AT1G69870.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAAGGTAGAGAAAAAGCCTGGAGGATGGAGAGCCGTCTCGTTCATTTTAG GAAATGAGACGCTGGAGAGACTGGGATCGATAGGATTGTTGGCAAACTTCA
genomic: GAAGGTAGAGAAAAAGCCTGGAGGATGGAGAGCCGTCTCGTTCATTTTAGgtattttaat ... ggttgaatagGAAATGAGACGCTGGAGAGACTGGGATCGATAGGATTGTTGGCAAACTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGATCCCTACAAGCGGATAAGTTCGCCGGGATCTATATTGGATGCTGAGAAGGTAGAGAAAAAGCCTGGAGGATGGAGAGCCGTCTCGTTCATTTTAGgtattttaattttatttttaggcttcgtgtacataatttagtttacctaatccttgacctttcctcagttattggctaatatttttttgttaatttcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctttcc