1 5' 3' | 2 5' 3' |
TTCGATTTCTATTTCATCGCCGGACCGTCGCCGTTAAATGTTGTTGATCAGTATACTCAGTTAATCGGAAGACCTGCTCCTATGCCGTACTGGTCTTTAGgtatgttcatttactgctctgtttttttttgttattgttttctctctctcttgtcttaatgttttgtggtaatttaaataggattagtgattatgtttgt...
species | Arabidopsis thaliana |
transcript | AT1G68560.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACTCAGTTAATCGGAAGACCTGCTCCTATGCCGTACTGGTCTTTAG GATTTCATCAATGTAGATGGGGATACCATAATCTATCAGTTGTTGAAGATGEST: gi|124773307|gb|EH863436.1|EH863436
genomic: ACTCAGTTAATCGGAAGACCTGCTCCTATGCCGTACTGGTCTTTAGgtatgttcat ... tgtgttgtagGATTTCATCAATGTAGATGGGGATACCATAATCTATCAGTTGTTGAAGATG
EST: TCGGAAGACCTGCTCCTATGCCGTACTGGTCTTTAG GATTTCATCAATGTAGATGGGGATACCATAATCTATCAGTTGTTGAAGATGEST: gi|164050717|gb|ES205542.1|ES205542
genomic: TCGGAAGACCTGCTCCTATGCCGTACTGGTCTTTAGgtatgttcat ... tgtgttgtagGATTTCATCAATGTAGATGGGGATACCATAATCTATCAGTTGTTGAAGATG
EST: GTATACTCAGTTAATCGGAAGACCTGCTCCTATGCCGTACTGGTCTTTAG GATTTCATCAA
genomic: GTATACTCAGTTAATCGGAAGACCTGCTCCTATGCCGTACTGGTCTTTAGgtatgttcat ... tgtgttgtagGATTTCATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGATTTCTATTTCATCGCCGGACCGTCGCCGTTAAATGTTGTTGATCAGTATACTCAGTTAATCGGAAGACCTGCTCCTATGCCGTACTGGTCTTTAGgtatgttcatttactgctctgtttttttttgttattgttttctctctctcttgtcttaatgttttgtggtaatttaaataggattagtgattatgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatagga