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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTTGAGAGCAGCCGGACCCAACACACTACTGCGTTGCCGCAACCACTTCATATGAACTTCAGGCCTCCACCTCCAGTGACTCAGCCTCACCACAACgtaagttatctcttttggtgtcgttaccttatactaatcatgttatgttatgttacttaatatatttatttatatgtaaggtatcttttaaaattttgaa...

Basic information

species Arabidopsis thaliana
transcript AT1G67870.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86055390|gb|DR351147.1|DR351147
EST:     TTCATATGAACTTCAGGCCTCCACCTCCAGTGACTCAGCCTCACCACAAC                         GGAAAAATGGGAAAGATAGGTAATGGATTGCAGCATGGTACACGAGATACA
genomic: TTCATATGAACTTCAGGCCTCCACCTCCAGTGACTCAGCCTCACCACAACgtaagttatc ... catttttcagGGAAAAATGGGAAAGATAGGTAATGGATTGCAGCAGGG-ACACGAGATACA
EST: gi|86055391|gb|DR351148.1|DR351148
EST:     TTCATATGAACTTCAGGCCTCCACCTCCAGTGACTCAGCCTCACCACAAC                         GGAAAAATGGGAAAGATAGGTAATGGATTGCAGCAGGGA---GAGATACAT
genomic: TTCATATGAACTTCAGGCCTCCACCTCCAGTGACTCAGCCTCACCACAACgtaagttatc ... catttttcagGGAAAAATGGGAAAGATAGGTAATGGATTGCAGCAGGGACACGAGATACAT
EST: gi|86055389|gb|DR351146.1|DR351146
EST:     TTCATATGAACTTCWVGCCTCCACCTCCAGTGACTCAGCCTCACCACAAC                         GGAAAAATGGGAAAGATAGGTAAATGGATTGCAGCAGGGACACGAGATACA
genomic: TTCATATGAACTTCAGGCCTCCACCTCCAGTGACTCAGCCTCACCACAACgtaagttatc ... catttttcagGGAAAAATGGGAAAGATAGGTAA-TGGATTGCAGCAGGGACACGAGATACA
EST: gi|116462358|gb|EG504950.1|EG504950
EST:     TTCATATGAACTTCAGGCCTCCACCTCCAGTGACTCAGCCTCACCACAAC                         GGAAAAATGGGAAAGATAGGTAATGGATTGCAGCGAGG-ACACGAGATACA
genomic: TTCATATGAACTTCAGGCCTCCACCTCCAGTGACTCAGCCTCACCACAACgtaagttatc ... catttttcagGGAAAAATGGGAAAGATAGGTAATGGATTGCAGC-AGGGACACGAGATACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTTTGAGAGCAGCCGGACCCAACACACTACTGCGTTGCCGCAACCACTTCATATGAACTTCAGGCCTCCACCTCCAGTGACTCAGCCTCACCACAACgtaagttatctcttttggtgtcgttaccttatactaatcatgttatgttatgttacttaatatatttatttatatgtaaggtatcttttaaaattttgaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctctttt