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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagattatttttcttattttggctattgatgttatgatctgtatcaaaatgctttgaacccacttgtcttacggtaaacatatagattcatcggaaaagattgtcgatatcgcggaatctgcaatgttttctatcttttctaaagcatggaacatcactctcttcactcggttttttggtttcagGCGTGGAGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAGGCAACGTGCAGCCAGACGCAGTTTTACAGACCGTGACGAAAACCGGAAA

Basic information

species Arabidopsis thaliana
transcript AT1G66240.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116457053|gb|EG499645.1|EG499645
EST:     GGGAAAATGGAAG                         GCGGGGAGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAG
genomic: GGGAAAATGGAAGgttagattat ... ttggtttcagGCGTGGAGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAG
EST: gi|124829762|gb|EH914348.1|EH914348
EST:     ATGTGTTGGAGCTGTGAAAAGAGTTCTTGGGAAAATGGAAG                         GCGTGGAGTCATTTGACGTTGTATATAAAGGAGCAGAAAGTGACGGTGAAA
genomic: ATGTGTTGGAGCTGTGAAAAGAGTTCTTGGGAAAATGGAAGgttagattat ... ttggtttcagGCGTGGAGTCATTTGACGTTG-ATATAAAGGAGCAGAAAGTGACGGTGAAA
EST: gi|125022912|gb|EL095181.1|EL095181
EST:     TTGGGAAAATGGAAG                         GCGTGGAGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAG
genomic: TTGGGAAAATGGAAGgttagattat ... ttggtttcagGCGTGGAGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAG
EST: gi|125228733|gb|EL242818.1|EL242818
EST:     CTGTGAAAAGAGTTCTTGGGAAAATGGAAG                         GCGTGGAGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAG
genomic: CTGTGAAAAGAGTTCTTGGGAAAATGGAAGgttagattat ... ttggtttcagGCGTGGAGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAG
EST: gi|125259613|gb|EL273698.1|EL273698
EST:     ATGTGTTGGAGCTGTGAAAAGAGTTCTTGGGAAAATGGAAG                         GCGTGGAGTCATTTGACGTTGATATAAAGGAGCAAGAAAGTGACGGTGAAA
genomic: ATGTGTTGGAGCTGTGAAAAGAGTTCTTGGGAAAATGGAAGgttagattat ... ttggtttcagGCGTGGAGTCATTTGACGTTGATATAAAGGAGCA-GAAAGTGACGGTGAAA
EST: gi|164163378|gb|ES130286.1|ES130286
EST:     TGTGAGGGATGTGTTGGAGCTGTGAAAAGTAGTTCTTGGG-AAATGGAAG                         GCGTGGAGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAG
genomic: TGTGAGGGATGTGTTGGAGCTGTGAAAAG-AGTTCTTGGGAAAATGGAAGgttagattat ... ttggtttcagGCGTGGAGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAG
EST: gi|164002383|gb|ES136011.1|ES136011
EST:     TGTGAGGGATGTGTTGGAGCTGTG-AAAGAGTTCTTGGG-AAATGGAAG                         GCGTGGAGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAG
genomic: TGTGAGGGATGTGTTGGAGCTGTGAAAAGAGTTCTTGGGAAAATGGAAGgttagattat ... ttggtttcagGCGTGGAGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatcttttctaaagcatggaacatcactctcttcactcggttttttggtttcagGCGTGGAGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAGGCAACGTGCAGCCAGACGCAGTTTTACAGACCGTGACGAAAACCGGAAA
       ttctaaa  putative branch site (score: 2)
                                         tttttt  putative PPT
     ttttctaaa  TA-rich tract