1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGATGCTAAGCTCTTCAACTGTGTTCAGgtttgaaatatagttaaaacaatacttgtgtgattctgttttcttgtactacttgttattgagatgtgataaaatttgtggttgtag
species | Arabidopsis thaliana |
transcript | AT1G65820.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAACTGTGTTCAG AGAGGACATCAAAACTCTTTAGAGATGATGCCAATGTATTTCATACTGATGEST: gi|124918586|gb|EH992410.1|EH992410
genomic: CAACTGTGTTCAGgtttgaaata ... gtggttgtagAGAGGACATCAAAACTCTTTAGAGATGATGCCAATGTATTTCATACTGATG
EST: TGCAATAGAATCAGAAAACAAAGATGCTAAGCTCTTACAACTGTGTTCAG AGAGGACATCAAEST: gi|125209969|gb|EL224923.1|EL224923
genomic: TGCAATAGAATCAGAAAACAAAGATGCTAAGCTCTT-CAACTGTGTTCAGgtttgaaata ... gtggttgtagAGAGGACATCAA
EST: CTCTTCAACTGTGTTCAG AGAGGACATCAAAACTCTTTAGAGATGATGCCAATGTATTTCATACTGATGEST: gi|124788665|gb|EH878344.1|EH878344
genomic: CTCTTCAACTGTGTTCAGgtttgaaata ... gtggttgtagAGAGGACATCAAAACTCTTTAGAGATGATGCCAATGTATTTCATACTGATG
EST: ATGCAATAGAATCAGAAAACAAAGATGCTAAGCTCTTCAACTGTGTTCAG AGAGGACATCAAAACTCTT
genomic: ATGCAATAGAATCAGAAAACAAAGATGCTAAGCTCTTCAACTGTGTTCAGgtttgaaata ... gtggttgtagAGAGGACATCAAAACTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGATGCTAAGCTCTTCAACTGTGTTCAGgtttgaaatatagttaaaacaatacttgtgtgattctgttttcttgtactacttgttattgagatgtgataaaatttgtggttgtag
- - - - - - - - - - - - - - - - - - - - - - - AAGATG