1 5' 3' | 2 5' 3' | 3 5' 3' |
...taattgattagtatgagcgagattgtcttatcggttagatctgttgtttgttcatcttcaattttgaatgatctcacatgagtctatgatcttgatgcagGTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGATGCTAAGCTCTTCAACTGTGTTCAG
species | Arabidopsis thaliana |
transcript | AT1G65820.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGGATGGGTGCTCAAGTCGGCAGAGCTCGCAAAAG GTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGAEST: gi|86081471|gb|DR377228.1|DR377228
genomic: CTGGATGGGTGCTCAAGTCGGCAGAGCTCGCAAAAGgtttccacga ... cttgatgcagGTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGA
EST: GTGCTCAAGTCGGCAGAGCTCGCAAAAG GTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGAEST: gi|125092080|gb|EL149903.1|EL149903
genomic: GTGCTCAAGTCGGCAGAGCTCGCAAAAGgtttccacga ... cttgatgcagGTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGA
EST: TGTTTCCTCAACCTCTGGATGGGTGCTCAAGTCGGCAGAGCTCGCAAAAG GTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGAEST: gi|125103778|gb|EL158059.1|EL158059
genomic: TGTTTCCTCAACCTCTGGATGGGTGCTCAAGTCGGCAGAGCTCGCAAAAGgtttccacga ... cttgatgcagGTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGA
EST: CCTCAACCTCTGGATGGGTGCTCAAGTCGGCAGAGCTCGCAAAAG GTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGAEST: gi|86075632|gb|DR371389.1|DR371389
genomic: CCTCAACCTCTGGATGGGTGCTCAAGTCGGCAGAGCTCGCAAAAGgtttccacga ... cttgatgcagGTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGA
EST: TCAAGTCGGCAGAGCTCGCAAAAG GTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGA
genomic: TCAAGTCGGCAGAGCTCGCAAAAGgtttccacga ... cttgatgcagGTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGA
gtttgttcatcttcaattttgaatgatctcacatgagtctatgatcttgatgcagGTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGATGCTAAGCTCTTCAACTGTGTTCAG
aattttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattgattagtatgagcgagattgtcttatcggttagatctgttgtttgttcatcttcaattttgaatgatctcacatgagtctatgatcttgatgcagGTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGATGCTAAGCTCTTCAACTGTGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcacat