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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgatgtttatccataattcttatcaactcttttaagagtcgcgcgcataagtattttcctaactgatccttggaactgatgtagGATTTGTAATCTCGGGAAAAAAGATTCTTACGAACGCTCATGTAGTTGCTGATCACATATTTTTGCAAGTTAGAAAACATGGCTCACCCACAAAATACAA

Basic information

species Arabidopsis thaliana
transcript AT1G65640.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G65640.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv00s0215g00020.t01 (Vitis vinifera), 3'ss of exon 1
-gtatttgatgtttatccataattcttatcaactcttttaagagtcgcgc---gcataagtattttcctaactga-------tccttggaactgatgtagGATTTGTAATCTCGGGAAAAAAGATTCTTACGAACGCTCATGTAGTTGCTGATCACATATTTTTGCAAGTTAGAAAACATGGCTCACCCACAAAATACAA
   |  |||   |     | || |  ||| ||  |  |    | | |      |  |   | |||||  |||| |       | | ||    | ||||||||||||| ||| | || |||| ||||||||| || |||||||| || |||||||||| |||| |||  || ||||| || || || || || || || | 
gaaacctgaaaatagaaaaaaaattatatgaagccagtagtcatttgtttctagtgtggcttttttctgaacttagaatatcttcctgttgataatgtagGATTTGTCATCCCCGGGAAAAGGATTCTTACAAATGCTCATGTCGTGGCTGATCACACATTTGTGCTTGTAAGAAAGCACGGTTCTCCTACCAAGTATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaagagtcgcgcgcataagtattttcctaactgatccttggaactgatgtagGATTTGTAATCTCGGGAAAAAAGATTCTTACGAACGCTCATGTAGTTGCTGATCACATATTTTTGCAAGTTAGAAAACATGGCTCACCCACAAAATACAA
                 ataagtatttt  TA-rich tract