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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACATTGAAGAGATCGTTGTCTCTGCTCTTTCCTATCATCTGATGAACAACAAAGATCCTGAGTACAGAAACGGAAAACTGGTGATATCTTCTATAAGgttagaaatagtaccctaacttgtttcacaaacaaacctctacaagaacattggtactgatatgttctttattgtgcggttag

Basic information

species Arabidopsis thaliana
transcript AT1G64110.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G64110.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os01g12660.1 (Oryza sativa), 5'ss of exon 8
ATTACATTGAAGAGATCGTTGTCTCTGCTCTTTCCTATCATCTGATGAACAACAAAGATCCTGAGTACAGAAACGGAAAACTGGTGATATCTTCTATAAGgttagaaatagtaccctaacttgtttcacaaacaaacctctacaagaacattggtactgatatgttctttattgtgcggttag
  |||||||| ||||| || || || ||  |||| ||||| |||||||| || |||||||| |||||| ||||||||||| |  |  ||||| | |  ||||   |  ||| |   |    |  ||  |         ||| ||       |     | ||   |   | ||    | |    
GGTACATTGAGGAGATTGTGGTTTCAGCAGTTTCTTATCACCTGATGAATAAGAAAGATCCGGAGTACCGAAACGGAAAATTACTTCTATCTGCAAAGAGgt---acttagcatttttgtatagttgtctgttgg-tttcttcatctcttctccgctttatgactctctcatgacacag----