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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTGCGCATGTATGCAGgtactagaaagcgagaattagaaacttatctgagcttctgaaactatcttctcttatggtatatatatataacccaaaatccaattttctgcttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G63830.3
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125256993|gb|EL271078.1|EL271078
EST:     CTGCACGGTCTGCGCATGTATGCAG                         ACACAACACAAACTTGAGATGGACAAAAG
genomic: CTGCACGGTCTGCGCATGTATGCAGgtactagaaa ... ctgcttgcagACACAACACAAACTTGAGATGGACAAAAG
EST: gi|125185229|gb|EL200183.1|EL200183
EST:     CTGCACGGTCTGCGCATGTATGCAG                         ACACAACACAAACTTGAGATGG
genomic: CTGCACGGTCTGCGCATGTATGCAGgtactagaaa ... ctgcttgcagACACAACACAAACTTGAGATGG
EST: gi|164133434|gb|ES055671.1|ES055671
EST:     CTGCACGGTCTGCGCATGTATGCAG                         ACACAACACAAACTTGAGATGGACAAAAGAG
genomic: CTGCACGGTCTGCGCATGTATGCAGgtactagaaa ... ctgcttgcagACACAACACAAACTTGAGATGGACAAAAGAG
EST: gi|116478578|gb|EG521170.1|EG521170
EST:     CTGCACGGTCTGCGCATGTATGCAG                         ACACAACACAAACTTGAGATGGACAAAAGAGATGGAGTGTTTGGATCGCAG
genomic: CTGCACGGTCTGCGCATGTATGCAGgtactagaaa ... ctgcttgcagACACAACACAAACTTGAGATGGACAAAAGAGATGGAGTGTTTGGATCGCAG