1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagatttcttctgtaattcctataaccctatacaaacagacctgacatatatatatatatatatctgttgattacatctcaaagactctaaccatgaatattgtcttactaagattacttctatttgtctcatagGTCTGTTGGTCAATCTAACAATTGAAAGCTGCAATTTTATTTTCTGG
species | Arabidopsis thaliana |
transcript | AT1G62530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATAAAAAATAATAAAGAGAAACACTTCTCGCTCCTCATG GTCTGTTGGTCAATCTAACAATTGAAAGCTGCAATTTTATTTTCTGGEST: gi|116451566|gb|EG494158.1|EG494158
genomic: ATAAAAAATAATAAAGAGAAACACTTCTCGCTCCTCATGgtaagatttc ... tgtctcatagGTCTGTTGGTCAATCTAACAATTGAAAGCTGCAATTTTATTTTCTGG
EST: ATAAAAAATAATAAAGAGAAACACTTCTCGCTCCTCATG GTCTGTTGGTCAATCTAACAATTGAAAGCTGCAATTTTATTTTCTGG
genomic: ATAAAAAATAATAAAGAGAAACACTTCTCGCTCCTCATGgtaagatttc ... tgtctcatagGTCTGTTGGTCAATCTAACAATTGAAAGCTGCAATTTTATTTTCTGG
aaagactctaaccatgaatattgtcttactaagattacttctatttgtctcatagGTCTGTTGGTCAATCTAACAATTGAAAGCTGCAATTTTATTTTCTGG
cttctatttgtctc CT-rich tract
atgaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatttcttctgtaattcctataaccctatacaaacagacctgacatatatatatatatatatctgttgattacatctcaaagactctaaccatgaatattgtcttactaagattacttctatttgtctcatagGTCTGTTGGTCAATCTAACAATTGAAAGCTGCAATTTTATTTTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC