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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaacattaacattttttttttaaaccattctatgctcatattggttacataaaaattaccatttatgttttgatgtgttgaaagGTATGCACCGGTTCTAGTAGCCATGTACAACGGGTGGGATGCGATATCGAGGTTCATTCCCTCGATCAAACCGTTAGCAATGGAGTCTAGGAAATGGATC

Basic information

species Arabidopsis thaliana
transcript AT1G61630.1
intron # 6
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgctcatattggttacataaaaattaccatttatgttttgatgtgttgaaagGTATGCACCGGTTCTAGTAGCCATGTACAACGGGTGGGATGCGATATCGAGGTTCATTCCCTCGATCAAACCGTTAGCAATGGAGTCTAGGAAATGGATC
                                      ttttgat  putative branch site (score: 4)
               ttacataaaaattacc  TA-rich tract