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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTTGAAAAGAAGAGGAAGCAAGAGGAAATGGAGGATTCAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAGgtttcactattcttcatcttcttcactggattggtatctctcgtctttagcttaatctgagctgtgatcgaatgaaacag

Basic information

species Arabidopsis thaliana
transcript AT1G61415.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116468635|gb|EG511227.1|EG511227
EST:     CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG                         GTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
genomic: CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAGgtttcactat ... aatgaaacagGTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
EST: gi|116468606|gb|EG511198.1|EG511198
EST:     CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG                         GTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
genomic: CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAGgtttcactat ... aatgaaacagGTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
EST: gi|116468631|gb|EG511223.1|EG511223
EST:     CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG                         GTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
genomic: CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAGgtttcactat ... aatgaaacagGTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
EST: gi|116468620|gb|EG511212.1|EG511212
EST:     CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG                         GTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
genomic: CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAGgtttcactat ... aatgaaacagGTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
EST: gi|116468622|gb|EG511214.1|EG511214
EST:     CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG                         GTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
genomic: CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAGgtttcactat ... aatgaaacagGTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
EST: gi|116468634|gb|EG511226.1|EG511226
EST:     CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG                         GTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
genomic: CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAGgtttcactat ... aatgaaacagGTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
EST: gi|116468621|gb|EG511213.1|EG511213
EST:     CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG                         GTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
genomic: CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAGgtttcactat ... aatgaaacagGTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
EST: gi|116407140|gb|EG449732.1|EG449732
EST:     CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG                         GTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
genomic: CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAGgtttcactat ... aatgaaacagGTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
EST: gi|116468633|gb|EG511225.1|EG511225
EST:     CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG                         GTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
genomic: CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAGgtttcactat ... aatgaaacagGTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
EST: gi|116468630|gb|EG511222.1|EG511222
EST:     CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG                         GTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
genomic: CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAGgtttcactat ... aatgaaacagGTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
EST: gi|116407142|gb|EG449734.1|EG449734
EST:     CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG                         GTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
genomic: CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAGgtttcactat ... aatgaaacagGTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
EST: gi|116468623|gb|EG511215.1|EG511215
EST:     CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG                         GTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
genomic: CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAGgtttcactat ... aatgaaacagGTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
EST: gi|116468632|gb|EG511224.1|EG511224
EST:     CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG                         GTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA
genomic: CAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAGgtttcactat ... aatgaaacagGTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCA