1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagaacctatcttaatcacttgcaaggtctaaatttgattctaaattcttacgttttcgcgcgttttttatttgttgtgacagGCATGGGACTCGTGGAGCGAAAACGGGGGAGTGAATCTACTGGACCAAGATCTTGATGATTCTGATTCAGTTAATTCAGTTGAAGCAGGAAGATGTGTTC
species | Arabidopsis thaliana |
transcript | AT1G61360.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAAGTTTCAGCTATGGCAAAAGATAACAAAAACCTTCTTTCATAT GCATGGGACTCGTGGAGCGAAAACGGGGGAGTGAATCTACTGGACCAAGATEST: gi|301501537|gb|HO207077.1|HO207077
genomic: CAAGTTTCAGCTATGGC-AAAGATAACAAAAACCTTCTTTCATATgtaagaacct ... gttgtgacagGCATGGGACTCGTGGAGCGAAAACGGGGGAGTGAATCTACTGGACCAAGAT
EST: AGATTTCAAGTTTCAGCTATGGCAAAGATAACAAAAACCTTCTTTCATAT GCATGGGACTCGTGGAGCGAAAACGGGGGAGTGAATCTACTGGACCAAGAT
genomic: AGATTTCAAGTTTCAGCTATGGCAAAGATAACAAAAACCTTCTTTCATATgtaagaacct ... gttgtgacagGCATGGGACTCGTGGAGCGAAAACGGGGGAGTGAATCTACTGGACCAAGAT
ctaaatttgattctaaattcttacgttttcgcgcgttttttatttgttgtgacagGCATGGGACTCGTGGAGCGAAAACGGGGGAGTGAATCTACTGGACCAAGATCTTGATGATTCTGATTCAGTTAATTCAGTTGAAGCAGGAAGATGTGTTC
ttcttac putative branch site (score: 2)
ttttttatttgttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacctatcttaatcacttgcaaggtctaaatttgattctaaattcttacgttttcgcgcgttttttatttgttgtgacagGCATGGGACTCGTGGAGCGAAAACGGGGGAGTGAATCTACTGGACCAAGATCTTGATGATTCTGATTCAGTTAATTCAGTTGAAGCAGGAAGATGTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG