1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGACATTTACAGCTTCGGAGTTCTGATGCTCGAAATCATCACTGGCAAGGAGATTTCAAGTTTCAGCTATGGCAAAGATAACAAAAACCTTCTTTCATATgtaagaacctatcttaatcacttgcaaggtctaaatttgattctaaattcttacgttttcgcgcgttttttatttgttgtgacag
species | Arabidopsis thaliana |
transcript | AT1G61360.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAAGTTTCAGCTATGGCAAAAGATAACAAAAACCTTCTTTCATAT GCATGGGACTCGTGGAGCGAAAACGGGGGAGTGAATCTACTGGACCAAGATEST: gi|301501537|gb|HO207077.1|HO207077
genomic: CAAGTTTCAGCTATGGC-AAAGATAACAAAAACCTTCTTTCATATgtaagaacct ... gttgtgacagGCATGGGACTCGTGGAGCGAAAACGGGGGAGTGAATCTACTGGACCAAGAT
EST: AGATTTCAAGTTTCAGCTATGGCAAAGATAACAAAAACCTTCTTTCATAT GCATGGGACTCGTGGAGCGAAAACGGGGGAGTGAATCTACTGGACCAAGAT
genomic: AGATTTCAAGTTTCAGCTATGGCAAAGATAACAAAAACCTTCTTTCATATgtaagaacct ... gttgtgacagGCATGGGACTCGTGGAGCGAAAACGGGGGAGTGAATCTACTGGACCAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACATTTACAGCTTCGGAGTTCTGATGCTCGAAATCATCACTGGCAAGGAGATTTCAAGTTTCAGCTATGGCAAAGATAACAAAAACCTTCTTTCATATgtaagaacctatcttaatcacttgcaaggtctaaatttgattctaaattcttacgttttcgcgcgttttttatttgttgtgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG