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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcgttttatacttttatgtcgtaggatattaattgtgatgaattggagtttatgaattatagtatcaattcttgattttgtttttctcatgaataggctttttttctttgtctttggttagGGACAATGAAGCGAAGATGATAGAGAAGATTGCAAGTGATGTTTCAGATAAACTCAATACCACACCGTCTAGGGATTTTGATGGCATGATTGGACTTGAA

Basic information

species Arabidopsis thaliana
transcript AT1G56540.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcttgattttgtttttctcatgaataggctttttttctttgtctttggttagGGACAATGAAGCGAAGATGATAGAGAAGATTGCAAGTGATGTTTCAGATAAACTCAATACCACACCGTCTAGGGATTTTGATGGCATGATTGGACTTGAA
   tcttgat  putative branch site (score: 4)
                               ctttttttctttgtct  putative PPT
     ttgattttgttttt  TA-rich tract