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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttcagcttctgaaatccaacaatttagaatctttgttgctcctatatgatttgtataattcatatgtaagcttgatcaaagctacaatagaatgtgattatgtttagctttcattactgtgtctattggtttaagtcgtttgcatttgtttctcttgacatttgaacattatatgaatatttttcctcagGTCATTGTCGAGAAATGACATTCAAATCCTAGTCGGTCATGGATGTCCAGCGACTGATAGAAAAGTGGTTTTCTCAGGAAAACTACTGAGGAAGCGTGTT

Basic information

species Arabidopsis thaliana
transcript AT1G55040.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtttgcatttgtttctcttgacatttgaacattatatgaatatttttcctcagGTCATTGTCGAGAAATGACATTCAAATCCTAGTCGGTCATGGATGTCCAGCGACTGATAGAAAAGTGGTTTTCTCAGGAAAACTACTGAGGAAGCGTGTT
                 tcttgac  putative branch site (score: 3)
                                          tatttttcctc  putative PPT
                      acatttgaacattata  TA-rich tract