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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGCGTGTATGGTCCATCGATTATTCATCAGCAGATCCAACATTGTTAGCTAGTGGTAGTGATGATGGTTCGGTTAAGCTCTGGAGTATCAATCAGgcaaacttcgaaactaaaccaaaacgtatttatgctcggaaatgcgagaatagttcttttgagggatgtgtttttaacggttgagttcgttttcctctgtttcag

Basic information

species Arabidopsis thaliana
transcript AT1G53090.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53090.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA06G37080.1 (Glycine max), 5'ss of exon 6
------------------------TGAGAAGCGTGTATGGTCCATCGATTATTCATCAGCAGATCCAACATTGTTAGCTAGTGGTAGTGATGATGGTTCGGTTAAGCTCTGGAGTATCAATCAGgcaaacttcgaaactaaaccaaaacgtatttatgctcggaaatgcgagaatagttcttttgagggatgtgtttttaacggttgagttcgttttcctctgtttcag
                        |||     | |||||||| || ||||  ||||||||||| |||||||||||||| ||||| |||||||| ||||| || ||||| |||| |||||||||||||| |         | ||| ||   | |||| ||| |    |  | |  || |     ||   ||||  || ||     |      | | | | | |  | |||
AGTGCAGTCTGAAATGAAGGAGCATGAACGAAGGGTATGGTCTATTGATTTCTCATCAGCAGACCCAACATTGTTAGCAAGTGGGAGTGATGACGGTTCTgtcaagctatggaatatcaatcaggcaatc---------agaccgaacattcttta-gcttgttt-tatgtgtttaatctagatgcatgatggattgtt-----tccctcacatgtgcttttactgcag

upper sequence: AT1G53090.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G35190.1 (Glycine max), 5'ss of exon 9
------------------------TGAGAAGCGTGTATGGTCCATCGATTATTCATCAGCAGATCCAACATTGTTAGCTAGTGGTAGTGATGATGGTTCGGTTAAGCTCTGGAGTATCAATCAGgcaaacttcgaaactaaaccaaaacgtatttatgctcggaaatgcgaga----atagt--tcttttgagggatgtgtttttaacg-gttgagttcgttttcctctgtttcag---------------------
                        ||||  ||| || ||||| || ||||  ||||||||||| |||||| ||||||| ||||| || ||||| ||||| || ||||| |||||||||||||||||||  | |     |  ||      | || |  |||  ||||    |        |||  ||| |||   | | | | | ||    | ||  |   |  |    ||||||                       
AGTAATCTCTGAAATGAGGGAGCATGAGCGGCGGGTGTGGTCAATTGATTTCTCATCAGCAGACCCAACAATGTTAGCAAGTGGGAGCGATGACGGTTCTgtcaagctatggagtatcaatcaggcaa-ttccatttttgcacttggtggaatgtcagctttgaaactaaacgtactgcagtcatctgttgcatgttttatgtatattatgctggatgtataatgagttgtttctctcacctgggatgtttctgcag

upper sequence: AT1G53090.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G35320.1 (Glycine max), 5'ss of exon 6
TGAGAAGCGTGTATGGTCCATCGATTATTCATCAGCAGATCCAACATTGTTAGCTAGTGGTAGTGATGATGGTTCGGTTAAGCTCTGGAGTATCAATCAGgcaaacttcgaaactaaaccaaaacgtatttatgctcggaaatgcgaga----atagt--tcttttgagggatgtgtttttaacg-gttgagttcgttttcctctgtttcag---------------------
 |||  ||| || |||||||| ||||  ||||||||||| |||||| |||| || ||||| || ||||| ||||| || ||||| |||||||||||||||||||  | |     |  ||      | || |  |||  ||||    |        |||  ||| |||   | | | | | ||    |  |  |   |  |    ||||||                       
CGAGCGGCGGGTGTGGTCCATTGATTTCTCATCAGCAGACCCAACAATGTTGGCAAGTGGGAGCGATGACGGTTCTGTCAAGCTATGGAGTATCAATCAGgcaa-ttccatttttgcacttggtggaatgtcagctttgaaactaaacgtactgcagtcatctgttgcatgttttatgtatattatgcgggatgtataatgagttgtttctctcacctgggatgtttctgcag

upper sequence: AT1G53090.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G25240.1 (Glycine max), 5'ss of exon 6
------------------------TGAGAAGCGTGTATGGTCCATCGATTATTCATCAGCAGATCCAACATTGTTAGCTAGTGGTAGTGATGATGGTTCGGTTAAGCTCTGGAGTATCAATCAGgcaaacttcgaaactaaaccaaaacgtatttatgctcggaaatgcgagaatagttcttttgagggatgtgtttttaacggttgagttcgttttcctctgtttcag
                        |||| |  | |||||||| || ||||  |||||||| ||||| || |||||||| ||||| |||||||| ||||| || ||||| |||| |||||||||||||| |    | || ||||  |  | | | |||| |  |   |   |   ||| | | |   ||| ||| |   | ||   ||   |   |              
CGTGCAGTCTGAAATGAGGGAGCATGAGCAAAGGGTATGGTCTATTGATTTCTCATCAGCGGATCCGACGTTGTTAGCAAGTGGGAGTGATGACGGTTCTgtcaagctatggaatatcaatcaggcaatc----agaccaaac--attcttttgtatgttttgtgtt-taattctagatgtatgatgggttgtttccctcacatgtgctgttactgcag----------

upper sequence: AT1G53090.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv19s0014g02660.t01 (Vitis vinifera), 5'ss of exon 5
TGAGAAGCGTGTATGGTCCATCGATTATTCATCAGCAGATCCAACATTGTTAGCTAGTGGTAGTGATGATGGTTCGGTTAAGCTCTGGAGTATCAATCAGgcaa----acttcgaaactaaaccaaaa-cgtatttatgctcggaaatgcgagaatagttcttttg-agggatgtgtttttaac---ggttgagt--tcgttttcctctgtttcag---------------
                            |||| ||||||||||||| |||| ||||| || |||||||||||||| |||||||| |||||||||||||||||||    | ||    |||      |   |   |||        |  | |   | |  |    ||  ||   ||  | |  ||    || ||  |  |   ||   | | || ||                
---------------------------CTCATTAGCAGATCCAACAATGTTGGCTAGCGGCAGTGATGATGGTTCAGTTAAGCTATGGAGTATCAATCAGGCAATTCTATTTTTGCACTTGGTGGATgtcagctttgaaactaaacgtactgcagtcatctaattacagtcgtgcatatggaattctggatgtataataagttgtttttcttacatgggttgctactgcag