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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTCAGATGCTGGATTTCATTGCTTTGCACCTGACTGGATAGGATTCGGATTCAGTGACAAACCGCAGCCTGGATACGGTTTTAATTACACAGgttcgttgatggtacatttaatagtttgtgaactgcaaaatcagtgtacatggttctttgttctaataagttttaaatcttctcag

Basic information

species Arabidopsis thaliana
transcript AT1G52510.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G52510.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G117531_T04 (Zea mays), 5'ss of exon 4
TTGTCAGATGCTGGATTTCATTGCTTTGCACCTGACTGGATAGGATTCGGATTCAGTGACAAACCGCAGCCTGGATACGGTTTTAATTACACAGgttcgttgatggtacatttaa-tagtttgtgaactgcaaaatcagtgtacatggttctttgttctaata--agttttaaatcttctcag------------
 || |||||||||| |  || |||||||||||||||||||| ||||| || |||||||| |  || || |||||||| || ||  | |  | ||||  |   |  ||  ||| || || | |      || |  |  ||  |  |   | | || |  |||||  | |||       | |||             
ATGGCAGATGCTGGCTACCACTGCTTTGCACCTGACTGGATCGGATTTGGGTTCAGTGAAATGCCACAACCTGGATATGGATTCGACTTTAAAGgtcaggaaaatgtgtattaaactaatgtcccgtttggatcactagaattga-attccattctaataatagtaatttaggcatatatcaattaagctaattc

upper sequence: AT1G52510.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G22840.1 (Glycine max), 5'ss of exon 4
TTGTCAGATGCTGGATTTCATTGCTTTGCACCTGACTGGATAGGATTCGGATTCAGTGACAAACCGCAGCCTGGATACGGTTTTAATTACACAGgttcgttgat-ggtacatttaatagtttgtgaact-------gcaaaatcagtgtacatggttctttgttctaataagttttaaatcttctcag
||||| ||||| || || || |||||||||||||||||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||||||||   | ||    |||| | |||  |||   | |       ||| || |    ||||    |  |  |  |  |    ||| | |  ||  ||
TTGTCGGATGCAGGGTTCCACTGCTTTGCACCTGACTGGATAGGATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAGgtttcataatcaaaacatcttatatcttgaagattttttcttgcagaaaccccatacagtcatactcata-tgcttttctttcatttctcatag

upper sequence: AT1G52510.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G03260.1 (Glycine max), 5'ss of exon 4
TTGTCAGATGCTGGATTTCATTGCTTTGCACCTGACTGGATAGGATTCGGATTCAGTGACAAACCGCAGCCTGGATACGGTTTTAATTACACAGgttcgttgat-ggtacatttaatagtttgtgaactgcaaaatcagtgtacatggttctttgttctaataagttttaaatcttctcag
||||| ||||| || || || ||||||||||| |||||||||||||| || |||||||||||||| || || ||||| |||||||||||||||||||   | ||    |||| | |||  ||| | | |    | |      || |  | ||      |  |    ||| | |  ||  ||
TTGTCGGATGCCGGGTTCCACTGCTTTGCACCAGACTGGATAGGATTTGGTTTCAGTGACAAACCACAACCAGGATATGGTTTTAATTACACAGgtttcataatcaaaacatcttatatcttgaggaatttttactgcagaaacctcatactcataaatgtttttctttcatttctcatag

upper sequence: AT1G52510.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv09s0002g07500.t01 (Vitis vinifera), 5'ss of exon 4
TTGTCAGATGCTGGATTTCATTGCTTTGCACCTGACTGGATAGGATTCGGATTCAGTGACAAACCGCAGCCTGGATACGGTTTTAATTACACAGgttcgttgatggtacatttaatagtttgtgaactgcaaaatcagtgtacatggttctttgttctaataagttttaaatcttctcag----------------------
 ||||||||| ||| ||||| || ||||||||||| |||||||| || || |||||||| || ||  |  | ||||| || ||| | |||||||||   || ||  | ||| || || | |   || |     |||||| |  ||  || |||||| || |||   | || | |    ||                      
ATGTCAGATGTTGGGTTTCACTGTTTTGCACCTGATTGGATAGGCTTTGGTTTCAGTGAGAAGCCATATTCAGGATATGGATTTGACTACACAGgtctttt-atttttcatatagtaatct--taattatgttatcagt-tgtattattttttgttata-taacgctcaactttatgaagttttctcttcttactgtatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124793608|gb|EH883287.1|EH883287
EST:     ATTCGGATTCAGTGACAAACCGCAGCCTGGATACGGTTTTAATTACACAG                         AAAAAGAGTACCATGA
genomic: ATTCGGATTCAGTGACAAACCGCAGCCTGGATACGGTTTTAATTACACAGgttcgttgat ... atcttctcagAAAAAGAGTACCATGA