1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TAACCCATTTGGTTTCGTTACAGACAACCCGTCTAGCCGGAGTGCAATTCAGTTACCAGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTACgtaaatttcacatatttactcagttcaattttgaactgtgattgaaattgaaaagatgcatggttcatatttgcttctattgatttcaaattccattttttatcatagtgttatatttttgttgattgttatgttgtgggtttag
species | Arabidopsis thaliana |
transcript | AT1G52510.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAATGTCGGCCAAATGCTCTAC AGGACTGAAGATAAAGGTAAAGAGTATGGCTCAACTATCAAATCTGGGAAGEST: gi|124880353|gb|EH959255.1|EH959255
genomic: GCAATGTCGGCCAAATGCTCTACgtaaatttca ... gtgggtttagAGGACTGAAGATAAAGGTAAAGAGTATGGCTCAACTATCAAATCTGGGAAG
EST: TTACCAGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTAC AGGACTGAAGATAAAGGTAAAGAGTATGGCTCAACTATCAAATCTGGGAAGEST: gi|125244493|gb|EL258578.1|EL258578
genomic: TTACCAGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTACgtaaatttca ... gtgggtttagAGGACTGAAGATAAAGGTAAAGAGTATGGCTCAACTATCAAATCTGGGAAG
EST: AGTTACCAGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTAC AGGACTGAAGATAAAGGTAAAGAGTATGGCTCAAEST: gi|125079409|gb|EL141425.1|EL141425
genomic: AGTTACCAGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTACgtaaatttca ... gtgggtttagAGGACTGAAGATAAAGGTAAAGAGTATGGCTCAA
EST: AGTTACCAGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTAC AGGACTGAAGATAAEST: gi|152037752|gb|BP796526.2|BP796526
genomic: AGTTACCAGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTACgtaaatttca ... gtgggtttagAGGACTGAAGATAA
EST: AGTTACCAGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTAC AGGACTGAAGATAAAGGTAAAGAGTATGGCTCAACTATCAAATCTGGGAAG
genomic: AGTTACCAGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTACgtaaatttca ... gtgggtttagAGGACTGAAGATAAAGGTAAAGAGTATGGCTCAACTATCAAATCTGGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACCCATTTGGTTTCGTTACAGACAACCCGTCTAGCCGGAGTGCAATTCAGTTACCAGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTACgtaaatttcacatatttactcagttcaattttgaactgtgattgaaattgaaaagatgcatggttcatatttgcttctattgatttcaaattccattttttatcatagtgttatatttttgttgattgttatgttgtgggtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA