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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgtttctgtcttattgctttttgtatagaagattttaattgatttatgcagtccctgagtctaatgagtaaagagggttttgtcaatttcagATAATGGATACAGAGACTATTCCAACAAATCCATTGAT

Basic information

species Arabidopsis thaliana
transcript AT1G52080.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116480265|gb|EG522857.1|EG522857
EST:     TACAAAAAGAATTGGACCTACTTTGCCTCCTCTTCCACCTCACTCTTCTG                         ATAATGGATACAGAGACTATTCCAACAAATCCATTGAT
genomic: TACAAAAAGAATTGGACCTACTTTGCCTCCTCTTCCACCTCACTCTTCTGgtttgtgttt ... tcaatttcagATAATGGATACAGAGACTATTCCAACAAATCCATTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgatttatgcagtccctgagtctaatgagtaaagagggttttgtcaatttcagATAATGGATACAGAGACTATTCCAACAAATCCATTGAT
                     gtctaat  putative branch site (score: 3)
                                        ttttgtc  putative PPT
                                             tcaattt  TA-rich tract