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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttttatttgagttaaaagcaaatgttcaataagatcggatttatctttatcaaagctatttgttttggttagGGAAACTGGTATAGTGAAGCTTAGAATGCAAGGAGCTTGTAGCGGTTGTCCAAGTTCATCTGTTACTTTGAAATCCGGAATTGAGAATATGCTTATGCAT

Basic information

species Arabidopsis thaliana
transcript AT1G51390.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G51390.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA20G38630.1 (Glycine max), 3'ss of exon 3
---------------------gtaagttttttatttgagttaaaagcaaatgt-tcaataagatcggatttatct-ttatcaaagctatttgttttggttagGGAAACTGGTATAGTGAAGCTTAGAATGCAAGGAGCTTGTAGCGGTTGTCCAAGTTCATCTGTTACTTTGAAATCCGGAATTGAGAATATGCTTATGCAT
                     ||||  |  || ||     |   | ||| | | | | | | ||   | | |  | || |  | | | | | ||||    || || ||||| ||||| || |||||||||||||| || || || || || ||||||||||| || ||| ||||||| || ||||| |||||||| ||||||
agagctgttattgatactggtgtaa-ctaattgttaatacttggaccaattatcttactgatattttactgacttgttttttatgttgtgt-ttttctccagAGATACTGGAATAGTAAAACTTAGAATGCAAGGGGCATGCAGTGGCTGCCCAAGTTCATCAGTGACTCTGAAATCAGGCATTGAAAATATGCTGATGCAT

upper sequence: AT1G51390.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv13s0106g00620.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------------gtaagttttttatttgagttaaaagcaaatgttcaataagatcggatttatctttatcaaagc-tatttgttt---tggttagGGAAACTGGTATAGTGAAGCTTAGAATGCAAGGAGCTTGTAGCGGTTGTCCAAGTTCATCTGTTACTTTGAAATCCGGAATTGAGAATATGCTTATGCAT
                                        | || |    | |  |  || ||     | |||  | | || |   || | |||||   | | |||  ||||   |  | ||||| || || ||||| || || | |||||||||||| ||||| || || || || |||||||||||  ||||||| || ||||| |||||||| ||||| 
gtgagattcccttcatctagttagaagtaaagttgaatgttgaggtcacgactgaaagtataaatttcttttcccttatat-gacattgtttttattggatcatatgggtttacttcctcagGGAGACAGGAATAGTTAAACTAAAAATGCAAGGAGCATGTAGTGGCTGCCCTAGCTCATCTGTTACACTGAAATCTGGCATTGAAAATATGCTGATGCAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaatgttcaataagatcggatttatctttatcaaagctatttgttttggttagGGAAACTGGTATAGTGAAGCTTAGAATGCAAGGAGCTTGTAGCGGTTGTCCAAGTTCATCTGTTACTTTGAAATCCGGAATTGAGAATATGCTTATGCAT
                                         tttgtttt  CT-rich tract
                     atttatctttatcaaa  TA-rich tract