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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGTTCCTTTTAGACTTCTTGGTGATGAAGCAAAAGGTTGGCTAGATACTACTTATTTGTCGCCTTCAGGTAACCTTAGGATTTCTAGGGGAAACAAGgtaaatgagtttcttgattctcaaaaagaaaattaaagctttatagcatttttatccatgaggctgtatatttgtagcgcag

Basic information

species Arabidopsis thaliana
transcript AT1G51110.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G51110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G44120.1 (Glycine max), 5'ss of exon 6
TCCAGTTCCTTTTAGACTTCTTGGTGATGAAGCAAAAGGTTGGCTAGATACTACTTATTTGTCGCCTTCAGGTAACCTTAGGATTTCTAGGGGAAACAAGgtaaatgagtttcttgattctcaaaaagaaaattaaagctttatagcatttttatccatgaggctgtatatttgtagcgcag------------------------------------------------------------------
||||||||| ||||| || || || ||||||||||| |||||| |||| || || |||||||||  |||||| ||||||   || || |  ||||| ||||| | |  |  | || | |   ||||| |  |||  ||   | |    ||    ||| ||||      | ||  | |   |                                                                   
TCCAGTTCCATTTAGGCTACTGGGAGATGAAGCAAAGGGTTGGTTAGACACCACATATTTGTCGAGTTCAGGAAACCTTCATATCTCAAAAGGAAATAAGgtgattaggcattttcagt---aaaaacatcattctagtagtcttttgttccattccctgagtaaaattcttaattgtcaataacataaagtatttctatatatgctttatatttctaagaattattagcaacatatctatagtgcag

upper sequence: AT1G51110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G38820.2 (Glycine max), 5'ss of exon 4
TCCAGTTCCTTTTAGACTTCTTGGTGATGAAGCAAAAGGTTGGCTAGATACTACTTATTTGTCGCCTTCAGGTAACCTTAGGATTTCTAGGGGAAACAAGgtaaatgagtttcttgattctcaaaaagaaaattaaagctttatagcatttttatccatgaggctgtatatttgt----agcgcag------------------------------------------------------------
||||||||| ||||| || || || ||||||||||| |||||| |||| || || |||||||||  |||||| |||||| | || || || ||||| ||||| | |  |  | |  | |   || |  |   |   ||  || |      ||  |  |  |   ||  || ||||    | |  |                                                             
TCCAGTTCCATTTAGGCTGCTGGGAGATGAAGCAAAGGGTTGGTTAGACACCACATATTTGTCGAGTTCAGGAAACCTTCGTATCTCAAGAGGAAATAAGgtgattaggcatttccagtaaaaacatcattctagtagtcttttgttccgttccttgagtaaaatgcttaattgtcaataacataatgtatttctatatacgctttatatttctgaagaattattagcaacatatctatagtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125294425|gb|EL308510.1|EL308510
EST:     TAACCTTAGGATTTCTAGGGGAAACAAG                         GGAACAACGTTTGTTCTTCAGAAAGAAACCGTGCCTAGGCAGAAATTGTTA
genomic: TAACCTTAGGATTTCTAGGGGAAACAAGgtaaatgagt ... tgtagcgcagGGAACAACGTTTGTTCTTCAGAAAGAAACCGTGCCTAGGCAGAAATTGTTA