Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86079608|gb|DR375365.1|DR375365EST: TTCTTGCAGACTCAGAAGATTATGCCAGCTGCTTTGGTAGCTGGAATCAG TGCTCTCATGACTTGTTTCTACGTATACAAGATCGCAACTGGCGGCAACCA
genomic: TTCTTGCAGACTCAGAAGATTATGCCAGCTGCTTTGGTAGCTGGAATCAGgtatttatct ... tgtattgcagTGCTCTCATGACTTGTTTCTACGTATACAAGATCGCAACTGGCGGCAACCA
EST:
gi|86040484|gb|DR336239.1|DR336239EST: TTCTTGCAGACTCAGAAGATTATGCCAGCTGCTTTGGTAGCTGGAATCAG TGCTCTCATGACTTGTTTCTACGTATACAAGATCGCAACTGGCGGCAACCA
genomic: TTCTTGCAGACTCAGAAGATTATGCCAGCTGCTTTGGTAGCTGGAATCAGgtatttatct ... tgtattgcagTGCTCTCATGACTTGTTTCTACGTATACAAGATCGCAACTGGCGGCAACCA
EST:
gi|125092254|gb|EL150077.1|EL150077EST: AGAAGATTATGCCAGCTGCTTTGGTAGCTGGAATCAG TGCTCTCATGACTTGTTTCTACGTATACAAGATCGCAACTGGCGGCAACCA
genomic: AGAAGATTATGCCAGCTGCTTTGGTAGCTGGAATCAGgtatttatct ... tgtattgcagTGCTCTCATGACTTGTTTCTACGTATACAAGATCGCAACTGGCGGCAACCA
EST:
gi|124817447|gb|EH902313.1|EH902313EST: TTCTTGCAGACTCAGAAGATTATGCCAGCTGCTTTGGTAGCTGGAATCAG TGCTCTCATGACTTGTTTCT
genomic: TTCTTGCAGACTCAGAAGATTATGCCAGCTGCTTTGGTAGCTGGAATCAGgtatttatct ... tgtattgcagTGCTCTCATGACTTGTTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCATTGCAGCTGCTCTCACATTTGTCATGGGACAACGGTTCTTGCAGACTCAGAAGATTATGCCAGCTGCTTTGGTAGCTGGAATCAGgtatttatctttttttttttttgtatctaaagatttagactttcaagggctctcatgaacattttgtctgtattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA