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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATATCCTACTAATGGATCAGTCTACGTTTCAAATCTCCCCTTAGGAACTGACGAGAATATGTTGGCTGACTATTTTGGGACCATTGGGTTGCTTAAGgtatggtattggccaggtactaattgttgcttttgttttgacgtcattgcaatcttttataggtcactagattttcgagtttcttacatttttttctacattgcttttag

Basic information

species Arabidopsis thaliana
transcript AT1G50300.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G50300.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: AC185415.3_FGT005 (Zea mays), 5'ss of exon 2
TGGATATCCTACTAATGGATCAGTCTACGTTTCAAATCTCCCCTTAGGAACTGACGAGAATATGTTGGCTGACTATTTTGGGACCATTGGGTTGCTTAAGgtatggtattggccaggtactaattgtt-gcttttgttttgacgtcattgcaatcttttataggtcactag--attttcgagtttcttacatttttttctacattgcttttag----
  ||   ||    ||||| || || || || |  ||||| ||    |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||   |  |||||||  | || || |           | ||| ||   ||  ||||||  |  | |   |  ||  |    |    |   || | | |  |    ||      
AAGAGGGCCCCAAAATGGTTCTGTGTATGTCTGCAATCTACCTCCTGGAACTGACGAGAATATGTTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGgtatgggtcttaccaggtaacatttttttggccactaccaaaagtctttaagattgtttatatattcccaattacatttaaagaacacttagccttgtttgctgtaaaattgaacag

upper sequence: AT1G50300.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: AC233865.1_FGT006 (Zea mays), 5'ss of exon 2
TGGATATCCTACTAATGGATCAGTCTACGTTTCAAATCTCCCCTTAGGAACTGACGAGAATATGTTGGCTGACTATTTTGGGACCATTGGGTTGCTTAAGgtatggtattggccaggtactaattgttgctttt-------gttttgacgtcattgcaatcttttataggtcactagattttcgagtttcttacatttttttctacattgcttttag
                || || || || || |  ||||| ||    |||||||| || |||||||||||||| |||||||| ||||| || ||||| |||||||||   |  |||||||  | || | ||   |        |||| |  |  ||   |  ||||| |   || |  |    |   |  | |    | | || || | |      ||
----------------GGTTCTGTGTATGTCTGCAATCTACCTCCTGGAACTGATGAAAATATGTTGGCTGAATATTTTGGCACCATAGGCTTGCTAAAGGTATGGGTCTTACCAGgtaacatttttggccactaccaaaaattttaagattgttcatacattttaaattccatttaaagaacacttagcctcgtctctgttgtaaaattgcaacag

upper sequence: AT1G50300.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0010g01410.t01 (Vitis vinifera), 5'ss of exon 1
TGGATATCCTACTAATGGATCAGTCTACGTTTCAAATCTCCCCTTAGGAACTGACGAGAATATGTTGGCTGACTATTTTGGGACCATTGGGTTGCTTAAGgtatggtat-tggccaggtactaattgttgcttt-tgttttgacgtcattgcaatc------ttttataggtcactagattttcgagtttcttacatttttttctacattgcttttag-----------------
 |||   ||| | ||||| || ||||| ||||  ||  | ||    |||||||| || | |||||||||||| |||||||| |||||||||||| | ||||||    || || |  | || || |||    |   | || ||      || ||| |      |||| ||   |   | |  ||| | |      | |||| ||| |  ||  || |                   
AGGAGCCCCTTCAAATGGCTCTGTCTATGTTTGTAACTTGCCTCATGGAACTGATGAAACTATGTTGGCTGAATATTTTGGCACCATTGGGTTGATAAAGgtagttaatctgactggctattatttgaaattccatattgtgcttgttttacaagccttttgttttgtaaaacttgataagttcaaatgctcatccttttcttccattttctttctcattcacgttcctttgtag