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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAACGATTGTTAAGTCCGGAGTTTGGAGAGCTTTTAAAGATGATTCTCGAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATgtaagtttatttttgtttgtttaataatattgtaagttacgtgacattttctttttatatttacgcatgcatatataagattgtggattatatatcactc...

Basic information

species Arabidopsis thaliana
transcript AT1G49570.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86061778|gb|DR357535.1|DR357535
EST:     GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAAT                         GGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
genomic: GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATgtaagtttat ... tatgttgtagGGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
EST: gi|86061776|gb|DR357533.1|DR357533
EST:     GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAAT                         GGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
genomic: GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATgtaagtttat ... tatgttgtagGGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
EST: gi|86061771|gb|DR357528.1|DR357528
EST:     GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAAT                         GGATGTGATGGATCTATACTTCTGAACG
genomic: GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATgtaagtttat ... tatgttgtagGGATGTGATGGATCTATACTTCTGAACG
EST: gi|86061777|gb|DR357534.1|DR357534
EST:     GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAAT                         GGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
genomic: GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATgtaagtttat ... tatgttgtagGGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
EST: gi|86061768|gb|DR357525.1|DR357525
EST:     GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAAT                         GGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
genomic: GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATgtaagtttat ... tatgttgtagGGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
EST: gi|86061767|gb|DR357524.1|DR357524
EST:     GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAAT                         GGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
genomic: GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATgtaagtttat ... tatgttgtagGGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
EST: gi|86061775|gb|DR357532.1|DR357532
EST:     GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAAT                         GGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
genomic: GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATgtaagtttat ... tatgttgtagGGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
EST: gi|86061773|gb|DR357530.1|DR357530
EST:     GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAAT                         GGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTKCAAAGGAGAG
genomic: GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATgtaagtttat ... tatgttgtagGGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
EST: gi|86061769|gb|DR357526.1|DR357526
EST:     GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAAT                         GGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
genomic: GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATgtaagtttat ... tatgttgtagGGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
EST: gi|86061772|gb|DR357529.1|DR357529
EST:     GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAAT                         GGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
genomic: GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATgtaagtttat ... tatgttgtagGGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
EST: gi|86061770|gb|DR357527.1|DR357527
EST:     GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAAT                         GGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
genomic: GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATgtaagtttat ... tatgttgtagGGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
EST: gi|86061774|gb|DR357531.1|DR357531
EST:     GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAAT                         GGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG
genomic: GAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATgtaagtttat ... tatgttgtagGGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAG