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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAGGAAGCTTCCCTGAGGATTTACAAGCAGACGTGCAGGTTCTTGGAGCGAATATGTCTGCTCTTGGATTATCACAGAAACCTATCTACTTACACTgtaagtgattttgattgatttaacaccattactagctttttaccaaaagcaatcttgagattcttaattttttttcgcag

Basic information

species Arabidopsis thaliana
transcript AT1G49540.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G49540.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os08g38570.1 (Oryza sativa), 5'ss of exon 7
--GGAGAAGGAAGCTT-CCCTGAGGATTTACAAGCAGACGTGCAGGTTCTTGGAGCGAATATGTCTGCTCTTGGATTATCACAGAAACCTATCTACTTACACTgtaagtgattttgattgatttaacaccattac----tagctttttaccaaaagcaatcttgagattcttaattt--tttttcgcag---------------------------------------------
  |  |||    | |  | |||  |||||  | |   | ||||| || |||||||| |||||||||||||||||| | |||||||||||||| ||   |||  || ||   |  | ||    |   ||  | ||     || | |||       |    | ||   |  | ||||||   |||||  ||                                             
TTGTTGAAAACTGATAACTCTGGAGATTTTGACG---ATGTGCAAGTACTTGGAGCAAATATGTCTGCTCTTGGACTTTCACAGAAACCTATATATACACATGgtcagcattcatcatgccctcttcatgaatataccatatcctttgtttggcacttgtattagta--cataatttaacttttctgagttcttcatttggttgttacttatgtctgttgacggttgtattcag

upper sequence: AT1G49540.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G042371_T01 (Zea mays), 5'ss of exon 4
---GGAGAAGGAAGCTTCCCTGAGGATTTACAAGCAGACGTGCAGGTTCTTGGAGCGAATATGTCTGCTCTTGGATTATCACAGAAACCTATCTACTTACACTgtaagtgattttga------------------ttgatttaacaccattactagctttt------taccaaaagca--atcttgagattcttaattttttttcgcag------------------------------------
       ||     | || | ||||||||  |     | || || || |||||||| |||||||||||||||||  | ||||||||||| || ||   |||  || |||   | | |                  || ||| ||||  |  |    |||||       |  |||| |   |  |  | ||  |  |  | |||||                                        
CTGTTGAAACCTGACATCTCCGAGGATTTTGACA---ATGTTCAAGTCCTTGGAGCAAATATGTCTGCTCTTGGGCTTTCACAGAAACCCATATATACACATGgtcagtatctctcacatgacccatctgtatgtttaattgaacaataacatgtccttttatttggcatgaaaaacggcacttctatataatcgagctcttttccttttatttgatgttgcttttttgcatggtggtgtatcag

upper sequence: AT1G49540.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G41620.1 (Glycine max), 5'ss of exon 7
GGAGAAGGAA-GCTTCCCTGAGGATTTACAAGCAGACGTGCAGGTTCTTGGAGCGAATATGTCTGCTCTTGGATTATCACAGAAACCTATCTACTTACACTgtaagtgattttgattgat-ttaacaccattactagctttttaccaaaagca-atcttgagat----tcttaattttttttcgcag---------------
  |||||    | |   | || ||| |    | ||| || ||| || | || || |||||||| ||||||||| |||||||||||||||| ||  | ||  || ||| ||||   |  |  || | |    |  | |   |     |||| || || |||||||    | || |  |||||  ||                 
-CAGAAGTCCTGTTCTTCCGATGATATCATGGGAGATGTTCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTATCACAGAAACCTATTTATGTTCAAGgtcagtcatttcattgaaagttgaaattgatggt-gtgatgcgtaaaaaacagattttgagatcatattttcaaatttttgtgctctttcagcctttctca

upper sequence: AT1G49540.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G25600.1 (Glycine max), 5'ss of exon 7
GGAGAAGGAA-GCTTCCCTGAGGATTTACAAGCAGACGTGCAGGTTCTTGGAGCGAATATGTCTGCTCTTGGATTATCACAGAAACCTATCTACTTACACTgtaagtgattttgattga--tttaacaccattactagctttttaccaaaagcaatcttgagattcttaattttttttcgcag-------------------
  |||||    | |   | || ||| |    | ||| || ||| || | || || |||||||| ||||||||| |||||||||||||||| ||    ||  || ||| ||||   |  |  || ||    || |   | |   || ||||    ||   |||||  | |   | || ||  |                    
-CAGAAGTCCTGTTCTTCCGATGATATCATGGGAGATGTTCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTATCACAGAAACCTATTTATGCTCAAGgttagtcatttcattgaaagttgaaattgataatgtgatgcgtaacaaaca-gattcagagatgataatcatattgtcaaattttggtgctctttcagcct