Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTTATGGCCGGAATCTCATAAACTCTATGGTCATGGTAATGAACTATTTTCTCTCTGCTCTGACCACAAGGGAAACCTTGTTGCTTCATCGTGTAAGgtaagttaatgcagttttcagaatttttttacacttcttcaatctcctagatttagattttagatctaactgagcaggattccattactaaattattatttttatatatgaaccacaaacttcttcag

Basic information

species Arabidopsis thaliana
transcript AT1G49540.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G49540.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G41620.1 (Glycine max), 5'ss of exon 8
TACTTTATGGCCGGAATCTCATAAACTCTATGGTCATGGTAATGAACTATTTTCTCTCTGCTCTGACCACAAGGGAAACCTTGTTGCTTCATCGTGTAAGgtaagttaatgcagttttcagaatttttttacacttcttcaatctcctagatttagattttagatctaactgagcaggattccattactaaattattatt-tttatatatgaaccacaaacttcttcag
|||  | ||||| ||||| || ||||||||||||||||| ||||||||||||||| | || |  || || |||||  | ||||||||||| || ||||||||| || | ||    | | |    |        |  ||  |   |  |    |||||    |||| ||     ||    ||  |     ||||  || ||  ||                         
TACACTTTGGCCTGAATCACACAAACTCTATGGTCATGGAAATGAACTATTTTCTTTATGTTGCGATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAGgtatgt-agtgttagtcttaactgtgcacggtgcacctgtatattattgttattagacagaagatgtagt---gcctacttgtacgg--aaatccttgttgcttgc-----------------------

upper sequence: AT1G49540.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G25600.1 (Glycine max), 5'ss of exon 8
TACTTTATGGCCGGAATCTCATAAACTCTATGGTCATGGTAATGAACTATTTTCTCTCTGCTCTGACCACAAGGGAAACCTTGTTGCTTCATCGTGTAAGgtaagttaatgcagttttcagaatttttttacacttcttcaatc--tcctagatttagattttagatctaactgagcaggattccattactaaattattatttttatatatgaaccacaaacttcttcag
|||  | ||||| ||||| || ||||||||||||||||| || |||||||||||| | || | ||| || |||||  | ||||||||||| || |||||||| |||      ||| ||    |  | |  |||| | |   ||   |  ||||   |   ||||| ||  |||     |||   | ||  |   |   ||| |                           
TACACTTTGGCCTGAATCACACAAACTCTATGGTCATGGAAACGAACTATTTTCTTTATGTTGTGATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAGgtgagtggtgttagtctt----agctgtgcacacctgtattattgttgttagacagaagatttagttcctacttgtatggaaatccttgttgcttgcatatctc--------------------------

upper sequence: AT1G49540.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv01s0011g04130.t01 (Vitis vinifera), 5'ss of exon 8
TACTTTATGGCCGGAATCTCATAAACTCTATGGTCATGGTAATGAACTATTTTCTCTCTGCTCTGACCACAAGGGAAACCTTGTTGCTTCATCGTGTAAGgtaagttaatgcagttttcagaatttttttacacttcttcaatctcctagatttagattttagatctaactgagcaggattccattactaaattattatttttatatatgaaccacaaacttcttcag
|||  | ||||| || || || |||||||||||||| || ||||| || |||||| | |||| ||||||    || || |||||||||||||| |||||||||  |   |  |  |||     |  | ||| | | ||| | | ||  |  | |||||    ||  |||   |||    ||   ||   | |||    |  | |||  |                   
TACACTCTGGCCAGAGTCGCACAAACTCTATGGTCACGGGAATGAGCTGTTTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatctttttatcttt---gctagtgttatattacttgattttctaatttctagat----gacttaatatagccacgtt---ttgagatattgcagtgatgatacctt------------------