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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTGCTGCTGCTGTTTCTGCTTCTGCTTCTGCTTCCTCAGCCTCCACTACTGACTCTTCTGCTCAGTCTCAGATTCCTCCATCATCTACTTCTTAAGgtgattgattactttagtcctttacgtacatagatatctagtttcagctgatttttggaacttgatgagaattatcctattttatggattttagtgagtcttaaagtattgatgtgtgacattatgcatattgttattagatacttgaacgttatggaatcgatagacttatcgtcctttttcttcttactgcag

Basic information

species Arabidopsis thaliana
transcript AT1G49400.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164090274|gb|ES076816.1|ES076816
EST:     TACTGACTCTTCTGCTCAGTCTCAGATTCCTCCATCATCTACTTCTTAAG                         TTGTTTTAAGAGAA
genomic: TACTGACTCTTCTGCTCAGTCTCAGATTCCTCCATCATCTACTTCTTAAGgtgattgatt ... cttactgcagTTGTTTTAAGAGAA
EST: gi|164200560|gb|ES174955.1|ES174955
EST:     TACTGACTCTTCTGCTCAGTCTCAGATTCCTCCATCATCTACTTCTTAAG                         TTGTTTTAAGAGA
genomic: TACTGACTCTTCTGCTCAGTCTCAGATTCCTCCATCATCTACTTCTTAAGgtgattgatt ... cttactgcagTTGTTTTAAGAGA
EST: gi|124961645|gb|EL036147.1|EL036147
EST:     ATCATCTACTTCTTAAG                         TTGTTTTAAGAGAAACGTTTGCATAGCGAAGCGAGAAAGTTGCTAGGAGTT
genomic: ATCATCTACTTCTTAAGgtgattgatt ... cttactgcagTTGTTTTAAGAGAAACG-TTGCATAGCGAAGCGAGAAAGTTGCTAGGAGTT
EST: gi|164040982|gb|ES184206.1|ES184206
EST:     TTCCTCCATCATCTACTTCTTAAG                         TTG-TTTAAGAGAAACGTTCGCATAGCGAAGCGAGAAAGTTGCTAGGAGTT
genomic: TTCCTCCATCATCTACTTCTTAAGgtgattgatt ... cttactgcagTTGTTTTAAGAGAAACGTT-GCATAGCGAAGCGAGAAAGTTGCTAGGAGTT