1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttttacatgctctacaacttcttggagaatgctgtgatcgtctatgcatttctattcgcagctaacttaaactcttttacataattttttactttaaagGACAAATGAAGCATATAGTAAAGATCTTGAGCCTGTTGGTGGCTATCTCTGCCTTCTGGATTGGTCTTTTGCAGGCTGCAATTATTCCTCGAAGCCATAC
species | Arabidopsis thaliana |
transcript | AT1G48140.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tgcatttctattcgcagctaacttaaactcttttacataattttttactttaaagGACAAATGAAGCATATAGTAAAGATCTTGAGCCTGTTGGTGGCTATCTCTGCCTTCTGGATTGGTCTTTTGCAGGCTGCAATTATTCCTCGAAGCCATAC
agctaac putative branch site (score: 2)
ttttttacttt putative PPT
taacttaaactctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttacatgctctacaacttcttggagaatgctgtgatcgtctatgcatttctattcgcagctaacttaaactcttttacataattttttactttaaagGACAAATGAAGCATATAGTAAAGATCTTGAGCCTGTTGGTGGCTATCTCTGCCTTCTGGATTGGTCTTTTGCAGGCTGCAATTATTCCTCGAAGCCATAC
- - - - - - ctacaac
- - - - - - - - - - - - - - - - - - - - - ctatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acataat