1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CACTTGGCTCACCAGACAAACTACCTAATCACCCAAACGAAGAACCAAACATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAGgtaatagatttttcttctctttgtgtgtatagaagaaactgtggtttttgttcatcttcttttaattctttcgatttatgtccacacttaatttttggat...
species | Arabidopsis thaliana |
transcript | AT1G45249.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAG ATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATGEST: gi|116404874|gb|EG447466.1|EG447466
genomic: ATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAGgtaatagatt ... catggttcagATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATG
EST: GAAAATTACAAAGCACACGAATTTAGCAAAAAG ATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATGEST: gi|116404789|gb|EG447381.1|EG447381
genomic: GAAAATTACAAAGCACACGAATTTAGCAAAAAGgtaatagatt ... catggttcagATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATG
EST: ATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAG ATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATGEST: gi|116404878|gb|EG447470.1|EG447470
genomic: ATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAGgtaatagatt ... catggttcagATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATG
EST: ATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAG ATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATG
genomic: ATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAGgtaatagatt ... catggttcagATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTTGGCTCACCAGACAAACTACCTAATCACCCAAACGAAGAACCAAACATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAGgtaatagatttttcttctctttgtgtgtatagaagaaactgtggtttttgttcatcttcttttaattctttcgatttatgtccacacttaatttttggat
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