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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTACCTAATCACCCAAACGAAGAACCAAACATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAGgtaatagatttttcttctctttgtgtgtatagaagaaactgtggtttttgttcatcttcttttaattctttcgatttatgtccacacttaatttttggat...

Basic information

species Arabidopsis thaliana
transcript AT1G45249.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116404876|gb|EG447468.1|EG447468
EST:     ATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAG                         ATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATG
genomic: ATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAGgtaatagatt ... catggttcagATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATG
EST: gi|116404874|gb|EG447466.1|EG447466
EST:     GAAAATTACAAAGCACACGAATTTAGCAAAAAG                         ATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATG
genomic: GAAAATTACAAAGCACACGAATTTAGCAAAAAGgtaatagatt ... catggttcagATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATG
EST: gi|116404789|gb|EG447381.1|EG447381
EST:     ATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAG                         ATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATG
genomic: ATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAGgtaatagatt ... catggttcagATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATG
EST: gi|116404878|gb|EG447470.1|EG447470
EST:     ATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAG                         ATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATG
genomic: ATTTTGAAATTTTTTGGGAAAATTACAAAGCACACGAATTTAGCAAAAAGgtaatagatt ... catggttcagATCCAGTTATTAGGTGGAAGCAGATTTTGTAGAAAAATGGATGGTAGTATG