Sequence
atgc intronic sequence ATGC exonic sequence...gctgtttctctaactgatctatggagacgagtgcttttttgttcttttttaaggtgttgctgaaagctccatcggcttactctacgtcgatgttctttagATTTCAGGAATCAATTGCCTTTGGGAGATCTTTCCTTTCCAAATTTGCTAATGAAGTTTGGTGGATTCTCTAATTAAAAATCAATGGACTTCTCTTGAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G35516.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164172165|gb|ES061538.1|ES061538EST: TTTAGCGGCGGTAGGCTAGCTAAG ATTTCAGGAATCAATTGCCTTTGGGAGATCTTTCCTTTCCAGATTTGTTAA
genomic: TTTAGCGGCGGTAGGCTAGCTAAGgtctagagtt ... tgttctttagATTTCAGGAATCAATTGCCTTTGGGAGATCTTTCCTTTCCAAATTTGCTAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttaaggtgttgctgaaagctccatcggcttactctacgtcgatgttctttagATTTCAGGAATCAATTGCCTTTGGGAGATCTTTCCTTTCCAAATTTGCTAATGAAGTTTGGTGGATTCTCTAATTAAAAATCAATGGACTTCTCTTGAAG
ggcttac putative branch site (score: 3)
tgttcttt putative PPT
ttcttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gctgtttctctaactgatctatggagacgagtgcttttttgttcttttttaaggtgttgctgaaagctccatcggcttactctacgtcgatgttctttagATTTCAGGAATCAATTGCCTTTGGGAGATCTTTCCTTTCCAAATTTGCTAATGAAGTTTGGTGGATTCTCTAATTAAAAATCAATGGACTTCTCTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - -ctctaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctacg