Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacttattttcaagtgatctctgtttgcaccaactatagcattttgtatcacaatttttccattgcgtcccatcgttaaccattttgtgctttcttatggtatagGAAAATCCACTTCTAAGGGACGTTCCAACTCTTCATGGACCCATCTTGAGTGAGAAATCATATTATCCAGGACAGTCAAGCATCGGTTTTGCTACATCTC

Basic information

species Arabidopsis thaliana
transcript AT1G33060.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125021966|gb|EL094235.1|EL094235
EST:     CTGAAACTTCTCGTGCCAAAGACCGTAATTTGGGCAAGACGTTAGTAGAG                         GAAAATCCACTTCTAAGGG
genomic: CTGAAACTTCTCGTGCCAAAGACCGTAATTTGGGCAAGACGTTAGTAGAGgtaatactta ... tatggtatagGAAAATCCACTTCTAAGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaatttttccattgcgtcccatcgttaaccattttgtgctttcttatggtatagGAAAATCCACTTCTAAGGGACGTTCCAACTCTTCATGGACCCATCTTGAGTGAGAAATCATATTATCCAGGACAGTCAAGCATCGGTTTTGCTACATCTC
                       cgttaac  putative branch site (score: 3)
                                ttttgtgctttctt  putative PPT
                                        tttcttat  TA-rich tract