1 5' 3' | 2 5' 3' | 3 5' 3' |
...gattcttgacttgattgttaataaaacaaccatagaaattgatgtagacgaatatatatgaatcaatttattcatcatgatgctttattttttgtcttagGTTACTTCCTCTGCCACAAGAAGCTCTGTGTCTAATCGCTGCAACAGCTTTTACGGCAGAGTGTCTTCTCTTCTTCTTCCACTCCACAAGCCACAAAGGT
species | Arabidopsis thaliana |
transcript | AT1G32120.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCATGTTCTTCATCCTCGGATTTATCGCTTTGCTCTCCGAGAAAACAAG GTTACTTCCTCTGCCACAAGAAGCTCTGTGTCTAATCGCTGCAACAGCTTTEST: gi|164227837|gb|ES009256.1|ES009256
genomic: CTCATGTTCTTCATCCTCGGATTTATCGCTTTGCTCTCCGAGAAAACAAGgtattaaaaa ... tttgtcttagGTTACTTCCTCTGCCACAAGAAGCTCTGTGTCTAATCGCTGCAACAGCTTT
EST: TTTATCGCTTTGCTCTCCGAGAAAACAAG GTTACTTCCTCCGCCACAAGAAGCTCTGTGTCTAATCGCTGCAACAGCTTT
genomic: TTTATCGCTTTGCTCTCCGAGAAAACAAGgtattaaaaa ... tttgtcttagGTTACTTCCTCTGCCACAAGAAGCTCTGTGTCTAATCGCTGCAACAGCTTT
agacgaatatatatgaatcaatttattcatcatgatgctttattttttgtcttagGTTACTTCCTCTGCCACAAGAAGCTCTGTGTCTAATCGCTGCAACAGCTTTTACGGCAGAGTGTCTTCTCTTCTTCTTCCACTCCACAAGCCACAAAGGT
ctttattttttgtctt CT-rich tract
aatatatatgaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattcttgacttgattgttaataaaacaaccatagaaattgatgtagacgaatatatatgaatcaatttattcatcatgatgctttattttttgtcttagGTTACTTCCTCTGCCACAAGAAGCTCTGTGTCTAATCGCTGCAACAGCTTTTACGGCAGAGTGTCTTCTCTTCTTCTTCCACTCCACAAGCCACAAAGGT
- - - - - - - - - -aataaaa
- - - - - - - - - - - - - -aaccata
- - - - - - - - - - - - - - - - - - - - - - -agacgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatcaa